---------------------------------------------------------------------------- ENZYME nomenclature database SIB Swiss Institute of Bioinformatics; Geneva, Switzerland ---------------------------------------------------------------------------- Description: Definition of enzyme classes, subclasses and sub-subclasses Name: enzclass.txt Release: 27-Mar-2024 ---------------------------------------------------------------------------- 1. -. -.- Oxidoreductases. 1. 1. -.- Acting on the CH-OH group of donors. 1. 1. 1.- With NAD(+) or NADP(+) as acceptor. 1. 1. 2.- With a cytochrome as acceptor. 1. 1. 3.- With oxygen as acceptor. 1. 1. 4.- With a disulfide as acceptor. 1. 1. 5.- With a quinone or similar compound as acceptor. 1. 1. 7.- With an iron-sulfur protein as acceptor. 1. 1. 9.- With a copper protein as acceptor. 1. 1.98.- With other, known, acceptors. 1. 1.99.- With other acceptors. 1. 2. -.- Acting on the aldehyde or oxo group of donors. 1. 2. 1.- With NAD(+) or NADP(+) as acceptor. 1. 2. 2.- With a cytochrome as acceptor. 1. 2. 3.- With oxygen as acceptor. 1. 2. 4.- With a disulfide as acceptor. 1. 2. 5.- With a quinone or similar compound as acceptor. 1. 2. 7.- With an iron-sulfur protein as acceptor. 1. 2.98.- With other, known, acceptors. 1. 2.99.- With other acceptors. 1. 3. -.- Acting on the CH-CH group of donors. 1. 3. 1.- With NAD(+) or NADP(+) as acceptor. 1. 3. 2.- With a cytochrome as acceptor. 1. 3. 3.- With oxygen as acceptor. 1. 3. 4.- With a disulfide as acceptor. 1. 3. 5.- With a quinone or related compound as acceptor. 1. 3. 7.- With an iron-sulfur protein as acceptor. 1. 3. 8.- With a flavin as acceptor. 1. 3.98.- With other, known, acceptors. 1. 3.99.- With other acceptors. 1. 4. -.- Acting on the CH-NH2 group of donors. 1. 4. 1.- With NAD(+) or NADP(+) as acceptor. 1. 4. 2.- With a cytochrome as acceptor. 1. 4. 3.- With oxygen as acceptor. 1. 4. 4.- With a disulfide as acceptor. 1. 4. 5.- With a quinone or similar compound as acceptor. 1. 4. 7.- With an iron-sulfur protein as acceptor. 1. 4. 9.- With a copper protein as acceptor. 1. 4.98.- With other, known, acceptors. 1. 4.99.- With other acceptors. 1. 5. -.- Acting on the CH-NH group of donors. 1. 5. 1.- With NAD(+) or NADP(+) as acceptor. 1. 5. 3.- With oxygen as acceptor. 1. 5. 4.- With a disulfide as acceptor. 1. 5. 5.- With a quinone or similar compound as acceptor. 1. 5. 7.- With an iron-sulfur protein as acceptor. 1. 5. 8.- With a flavin as acceptor. 1. 5.98.- With other, known, acceptors. 1. 5.99.- With other acceptors. 1. 6. -.- Acting on NADH or NADPH. 1. 6. 1.- With NAD(+) or NADP(+) as acceptor. 1. 6. 2.- With a heme protein as acceptor. 1. 6. 3.- With oxygen as acceptor. 1. 6. 4.- With a disulfide as acceptor. 1. 6. 5.- With a quinone or similar compound as acceptor. 1. 6. 6.- With a nitrogenous group as acceptor. 1. 6. 7.- With a iron-sulfur protein as acceptor. 1. 6. 8.- With a flavin as acceptor. 1. 6.99.- With other acceptors. 1. 7. -.- Acting on other nitrogenous compounds as donors. 1. 7. 1.- With NAD(+) or NADP(+) as acceptor. 1. 7. 2.- With a cytochrome as acceptor. 1. 7. 3.- With oxygen as acceptor. 1. 7. 5.- With a quinone or similar compound as acceptor. 1. 7. 6.- With a nitrogenous group as acceptor. 1. 7. 7.- With an iron-sulfur protein as acceptor. 1. 7. 9.- With a copper protein as acceptor. 1. 7.99.- With other acceptors. 1. 8. -.- Acting on a sulfur group of donors. 1. 8. 1.- With NAD(+) or NADP(+) as acceptor. 1. 8. 2.- With a cytochrome as acceptor. 1. 8. 3.- With oxygen as acceptor. 1. 8. 4.- With a disulfide as acceptor. 1. 8. 5.- With a quinone or similar compound as acceptor. 1. 8. 6.- With an nitrogenous group as acceptor. 1. 8. 7.- With an iron-sulfur protein as acceptor. 1. 8.98.- With other, known, acceptors. 1. 8.99.- With other acceptors. 1. 9. -.- Acting on a heme group of donors. 1. 9. 3.- With oxygen as acceptor. 1. 9. 6.- With a nitrogenous group as acceptor. 1. 9.98.- With other, known, acceptors. 1. 9.99.- With other acceptors. 1.10. -.- Acting on diphenols and related substances as donors. 1.10. 1.- With NAD(+) or NADP(+) as acceptor. 1.10. 2.- With a cytochrome as acceptor. 1.10. 3.- With oxygen as acceptor. 1.10. 5.- With a quinone or related compound as acceptor. 1.10. 9.- With a copper protein as acceptor. 1.10.98.- With other, known, acceptors. 1.10.99.- With other acceptors. 1.11. -.- Acting on a peroxide as acceptor. 1.11. 1.- Peroxidases. 1.11. 2.- With H2O2 as acceptor, one oxygen atom of which is incorporated into the product. 1.12. -.- Acting on hydrogen as donors. 1.12. 1.- With NAD(+) or NADP(+) as acceptor. 1.12. 2.- With a cytochrome as acceptor. 1.12. 5.- With a quinone or similar compound as acceptor. 1.12. 7.- With an iron-sulfur protein as acceptor. 1.12.98.- With other, known, acceptors. 1.12.99.- With other acceptors. 1.13. -.- Acting on single donors with incorporation of molecular oxygen (oxygenases). The oxygen incorporated need not be derived from O2. 1.13. 1.- With NADH or NADPH as one donor. 1.13.11.- With incorporation of two atoms of oxygen. 1.13.12.- With incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases). 1.13.99.- Miscellaneous. 1.14. -.- Acting on paired donors, with incorporation or reduction of molecular oxygen. The oxygen incorporated need not be derived from O2. 1.14. 1.- With NADH or NADPH as one donor. 1.14. 2.- With ascorbate as one donor. 1.14. 3.- With reduced pteridine as one donor. 1.14.11.- With 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors. 1.14.12.- With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor. 1.14.13.- With NADH or NADPH as one donor, and incorporation of one atom of oxygen. 1.14.14.- With reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen. 1.14.15.- With reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen. 1.14.16.- With reduced pteridine as one donor, and incorporation of one atom of oxygen. 1.14.17.- With reduced ascorbate as one donor, and incorporation of one atom of oxygen. 1.14.18.- With another compound as one donor, and incorporation of one atom of oxygen. 1.14.19.- With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water. 1.14.20.- With 2-oxoglutarate as one donor, and the other dehydrogenated. 1.14.21.- With NADH or NADPH as one donor, and the other dehydrogenated. 1.14.99.- Miscellaneous. 1.15. -.- Acting on superoxide as acceptor. 1.15. 1.- Acting on superoxide as acceptor. 1.16. -.- Oxidizing metal ions. 1.16. 1.- With NAD(+) or NADP(+) as acceptor. 1.16. 3.- With oxygen as acceptor. 1.16. 5.- With a quinone or similar compound as acceptor. 1.16. 8.- With a flavin as acceptor. 1.16. 9.- With a copper protein as acceptor. 1.16.98.- With other known acceptors. 1.16.99.- With other acceptors. 1.17. -.- Acting on CH or CH2 groups. 1.17. 1.- With NAD(+) or NADP(+) as acceptor. 1.17. 2.- With a cytochrome as acceptor. 1.17. 3.- With oxygen as acceptor. 1.17. 4.- With a disulfide as acceptor. 1.17. 5.- With a quinone or similar compound as acceptor. 1.17. 7.- With an iron-sulfur protein as acceptor. 1.17. 8.- With a flavin as acceptor. 1.17. 9.- With a copper protein as acceptor. 1.17.98.- With other, known, acceptors. 1.17.99.- With other acceptors. 1.18. -.- Acting on iron-sulfur proteins as donors. 1.18. 1.- With NAD(+) or NADP(+) as acceptor. 1.18. 2.- With dinitrogen as acceptor. 1.18. 3.- With H(+) as acceptor. 1.18. 6.- With dinitrogen as acceptor. 1.18.96.- With other, known, acceptors. 1.18.99.- With H(+) as acceptor. 1.19. -.- Acting on reduced flavodoxin as donor. 1.19. 1.- With NAD(+) or NADP(+) as acceptor. 1.19. 6.- With dinitrogen as acceptor. 1.20. -.- Acting on phosphorus or arsenic in donors. 1.20. 1.- With NAD(+) or NADP(+) as acceptor. 1.20. 2.- With a cytochrome as acceptor. 1.20. 4.- With disulfide as acceptor. 1.20. 9.- With a copper protein as acceptor. 1.20.98.- With other, known acceptors. 1.20.99.- With other acceptors. 1.21. -.- Catalyzing the reaction X-H + Y-H = 'X-Y'. 1.21. 1.- With NAD(+) or NADP(+) as acceptor. 1.21. 3.- With oxygen as acceptor. 1.21. 4.- With a disulfide as acceptor. 1.21.98.- With other, known acceptors. 1.21.99.- With other acceptors. 1.22. -.- Acting on halogen in donors. 1.22. 1.- With NAD(+) or NADP(+) as acceptor. 1.23. -.- Reducing C-O-C group as acceptor. 1.23. 1.- With NADH or NADPH as donor. 1.23. 5.- With a quinone or similar compound as acceptor. 1.97. -.- Other oxidoreductases. 1.97. 1.- Other oxidoreductases. 1.98. -.- Enzymes using H2 as reductant. 1.98. 1.- Other oxidoreductases. 1.99. -.- Other enzymes using O2 as oxidant. 1.99. 1.- Hydroxylases. 1.99. 2.- Oxygenases. 2. -. -.- Transferases. 2. 1. -.- Transferring one-carbon groups. 2. 1. 1.- Methyltransferases. 2. 1. 2.- Hydroxymethyl-, formyl- and related transferases. 2. 1. 3.- Carboxy- and carbamoyltransferases. 2. 1. 4.- Amidinotransferases. 2. 1. 5.- Methylenetransferases. 2. 2. -.- Transferring aldehyde or ketonic groups. 2. 2. 1.- Transketolases and transaldolases. 2. 3. -.- Acyltransferases. 2. 3. 1.- Transferring groups other than amino-acyl groups. 2. 3. 2.- Aminoacyltransferases. 2. 3. 3.- Acyl groups converted into alkyl groups on transfer. 2. 4. -.- Glycosyltransferases. 2. 4. 1.- Hexosyltransferases. 2. 4. 2.- Pentosyltransferases. 2. 4. 3.- Sialyltransferases. 2. 4.99.- Transferring other glycosyl groups. 2. 5. -.- Transferring alkyl or aryl groups, other than methyl groups. 2. 5. 1.- Transferring alkyl or aryl groups, other than methyl groups. 2. 6. -.- Transferring nitrogenous groups. 2. 6. 1.- Transaminases. 2. 6. 2.- Amidinotransferases. 2. 6. 3.- Oximinotransferases. 2. 6.99.- Transferring other nitrogenous groups. 2. 7. -.- Transferring phosphorus-containing groups. 2. 7. 1.- Phosphotransferases with an alcohol group as acceptor. 2. 7. 2.- Phosphotransferases with a carboxy group as acceptor. 2. 7. 3.- Phosphotransferases with a nitrogenous group as acceptor. 2. 7. 4.- Phosphotransferases with a phosphate group as acceptor. 2. 7. 5.- Phosphotransferases with regeneration of donors, apparently catalyzing intramolecular transfers. 2. 7. 6.- Diphosphotransferases. 2. 7. 7.- Nucleotidyltransferases. 2. 7. 8.- Transferases for other substituted phosphate groups. 2. 7. 9.- Phosphotransferases with paired acceptors. 2. 7.10.- Protein-tyrosine kinases. 2. 7.11.- Protein-serine/threonine kinases. 2. 7.12.- Dual-specificity kinases (those acting on Ser/Thr and Tyr residues). 2. 7.13.- Protein-histidine kinases. 2. 7.14.- Protein-arginine kinases. 2. 7.99.- Other protein kinases. 2. 8. -.- Transferring sulfur-containing groups. 2. 8. 1.- Sulfurtransferases. 2. 8. 2.- Sulfotransferases. 2. 8. 3.- CoA-transferases. 2. 8. 4.- Transferring alkylthio groups. 2. 8. 5.- Thiosulfotransferases. 2. 9. -.- Transferring selenium-containing groups. 2. 9. 1.- Selenotransferases. 2.10. -.- Transferring molybdenum- or tungsten-containing groups. 2.10. 1.- Molybdenumtransferases or tungstentransferases with sulfide groups as acceptors. 3. -. -.- Hydrolases. 3. 1. -.- Acting on ester bonds. 3. 1. 1.- Carboxylic ester hydrolases. 3. 1. 2.- Thiolester hydrolases. 3. 1. 3.- Phosphoric monoester hydrolases. 3. 1. 4.- Phosphoric diester hydrolases. 3. 1. 5.- Triphosphoric monoester hydrolases. 3. 1. 6.- Sulfuric ester hydrolases. 3. 1. 7.- Diphosphoric monoester hydrolases. 3. 1. 8.- Phosphoric triester hydrolases. 3. 1.11.- Exodeoxyribonucleases producing 5'-phosphomonoesters. 3. 1.12.- Exodeoxyribonucleases producing 3'-phosphomonoesters. 3. 1.13.- Exoribonucleases producing 5'-phosphomonoesters. 3. 1.14.- Exoribonucleases producing 3'-phosphomonoesters. 3. 1.15.- Exonucleases active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters. 3. 1.16.- Exonucleases active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters. 3. 1.21.- Endodeoxyribonucleases producing 5'-phosphomonoesters. 3. 1.22.- Endodeoxyribonucleases producing other than 5'-phosphomonoesters. 3. 1.23.- Site specific endodeoxyribonucleases: cleavage is sequence specific. 3. 1.24.- Site specific endodeoxyribonucleases: cleavage is not sequence specific. 3. 1.25.- Site-specific endodeoxyribonucleases specific for altered bases. 3. 1.26.- Endoribonucleases producing 5'-phosphomonoesters. 3. 1.27.- Endoribonucleases producing other than 5'-phosphomonoesters. 3. 1.30.- Endoribonucleases active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters. 3. 1.31.- Endoribonucleases active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters. 3. 2. -.- Glycosylases. 3. 2. 1.- Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds. 3. 2. 2.- Hydrolyzing N-glycosyl compounds. 3. 2. 3.- Hydrolyzing S-glycosyl compounds. 3. 3. -.- Acting on ether bonds. 3. 3. 1.- Thioether and trialkylsulfonium hydrolases. 3. 3. 2.- Ether hydrolases. 3. 4. -.- Acting on peptide bonds (peptidases). 3. 4. 1.- alpha-Amino-acyl-peptide hydrolases. 3. 4. 2.- Peptidyl-amino-acid hydrolases. 3. 4. 3.- Dipeptide hydrolases. 3. 4. 4.- Peptidyl peptide hydrolases. 3. 4.11.- Aminopeptidases. 3. 4.12.- Peptidylamino-acid hydrolases or acylamino-acid hydrolases. 3. 4.13.- Dipeptidases. 3. 4.14.- Dipeptidyl-peptidases and tripeptidyl-peptidases. 3. 4.15.- Peptidyl-dipeptidases. 3. 4.16.- Serine-type carboxypeptidases. 3. 4.17.- Metallocarboxypeptidases. 3. 4.18.- Cysteine-type carboxypeptidases. 3. 4.19.- Omega peptidases. 3. 4.21.- Serine endopeptidases. 3. 4.22.- Cysteine endopeptidases. 3. 4.23.- Aspartic endopeptidases. 3. 4.24.- Metalloendopeptidases. 3. 4.25.- Threonine endopeptidases. 3. 4.26.- Glutamic endopeptidases. 3. 4.99.- Endopeptidases of unknown catalytic mechanism. 3. 5. -.- Acting on carbon-nitrogen bonds, other than peptide bonds. 3. 5. 1.- In linear amides. 3. 5. 2.- In cyclic amides. 3. 5. 3.- In linear amidines. 3. 5. 4.- In cyclic amidines. 3. 5. 5.- In nitriles. 3. 5.99.- In other compounds. 3. 6. -.- Acting on acid anhydrides. 3. 6. 1.- In phosphorus-containing anhydrides. 3. 6. 2.- In sulfonyl-containing anhydrides. 3. 6. 3.- Acting on acid anhydrides; catalyzing transmembrane movement of substances. 3. 6. 4.- Acting on ATP; involved in cellular and subcellular movement. 3. 6. 5.- Acting on GTP; involved in cellular and subcellular movement. 3. 7. -.- Acting on carbon-carbon bonds. 3. 7. 1.- In ketonic substances. 3. 8. -.- Acting on halide bonds. 3. 8. 1.- In C-halide compounds. 3. 8. 2.- In P-halide compounds. 3. 9. -.- Acting on phosphorus-nitrogen bonds. 3. 9. 1.- Acting on phosphorus-nitrogen bonds. 3.10. -.- Acting on sulfur-nitrogen bonds. 3.10. 1.- Acting on sulfur-nitrogen bonds. 3.11. -.- Acting on carbon-phosphorus bonds. 3.11. 1.- Acting on carbon-phosphorus bonds. 3.12. -.- Acting on sulfur-sulfur bonds. 3.12. 1.- Acting on sulfur-sulfur bonds. 3.13. -.- Acting on carbon-sulfur bonds. 3.13. 1.- Acting on carbon-sulfur bonds. 3.13. 2.- Thioether and trialkylsulfonium hydrolases. 4. -. -.- Lyases. 4. 1. -.- Carbon-carbon lyases. 4. 1. 1.- Carboxy-lyases. 4. 1. 2.- Aldehyde-lyases. 4. 1. 3.- Oxo-acid-lyases. 4. 1.99.- Other carbon-carbon lyases. 4. 2. -.- Carbon-oxygen lyases. 4. 2. 1.- Hydro-lyases. 4. 2. 2.- Acting on polysaccharides. 4. 2. 3.- Acting on phosphates. 4. 2.99.- Other carbon-oxygen lyases. 4. 3. -.- Carbon-nitrogen lyases. 4. 3. 1.- Ammonia-lyases. 4. 3. 2.- Lyases acting on amides, amidines, etc. 4. 3. 3.- Amine-lyases. 4. 3.99.- Other carbon-nitrogen lyases. 4. 4. -.- Carbon-sulfur lyases. 4. 4. 1.- Carbon-sulfur lyases. 4. 5. -.- Carbon-halide lyases. 4. 5. 1.- Carbon-halide lyases. 4. 6. -.- Phosphorus-oxygen lyases. 4. 6. 1.- Phosphorus-oxygen lyases. 4. 7. -.- Carbon-phosphorus lyases. 4. 7. 1.- Carbon-phosphorus lyases. 4. 8. -.- Nitrogen-oxygen lyases. 4. 8. 1.- Hydro-lyases. 4.98. -.- ATP-independent chelatases. 4.98. 1.- Forming coordination complexes. 4.99. -.- Other lyases. 4.99. 1.- Other lyases. 5. -. -.- Isomerases. 5. 1. -.- Racemases and epimerases. 5. 1. 1.- Acting on amino acids and derivatives. 5. 1. 2.- Acting on hydroxy acids and derivatives. 5. 1. 3.- Acting on carbohydrates and derivatives. 5. 1.99.- Acting on other compounds. 5. 2. -.- Cis-trans-isomerases. 5. 2. 1.- Cis-trans isomerases. 5. 3. -.- Intramolecular oxidoreductases. 5. 3. 1.- Interconverting aldoses and ketoses. 5. 3. 2.- Interconverting keto- and enol-groups. 5. 3. 3.- Transposing C=C bonds. 5. 3. 4.- Transposing S-S bonds. 5. 3.99.- Other intramolecular oxidoreductases. 5. 4. -.- Intramolecular transferases. 5. 4. 1.- Transferring acyl groups. 5. 4. 2.- Phosphotransferases (phosphomutases). 5. 4. 3.- Transferring amino groups. 5. 4. 4.- Transferring hydroxy groups. 5. 4.99.- Transferring other groups. 5. 5. -.- Intramolecular lyases. 5. 5. 1.- Intramolecular lyases. 5. 6. -.- Isomerases altering macromolecular conformation. 5. 6. 1.- Enzymes altering polypeptide conformation or assembly. 5. 6. 2.- Enzymes altering nucleic acid conformation. 5.99. -.- Other isomerases. 5.99. 1.- Other isomerases. 6. -. -.- Ligases. 6. 1. -.- Forming carbon-oxygen bonds. 6. 1. 1.- Ligases forming aminoacyl-tRNA and related compounds. 6. 1. 2.- Acid--alcohol ligases (ester synthases). 6. 1. 3.- Cyclo-ligases. 6. 2. -.- Forming carbon-sulfur bonds. 6. 2. 1.- Acid--thiol ligases. 6. 2. 2.- Amide--thiol ligases. 6. 3. -.- Forming carbon-nitrogen bonds. 6. 3. 1.- Acid--ammonia (or amine) ligases (amide synthases). 6. 3. 2.- Acid--amino-acid ligases (peptide synthases). 6. 3. 3.- Cyclo-ligases. 6. 3. 4.- Other carbon--nitrogen ligases. 6. 3. 5.- Carbon--nitrogen ligases with glutamine as amido-N-donor. 6. 4. -.- Forming carbon-carbon bonds. 6. 4. 1.- Forming carbon-carbon bonds. 6. 5. -.- Forming phosphoric ester bonds. 6. 5. 1.- Forming phosphoric ester bonds. 6. 6. -.- Forming nitrogen-metal bonds. 6. 6. 1.- Forming coordination complexes. 6. 7. -.- Forming nitrogen-nitrogen bonds. 6. 7. 1.- Forming diazo bonds. 7. -. -.- Translocases. 7. 1. -.- Catalysing the translocation of hydrons. 7. 1. 1.- Hydron translocation or charge separation linked to oxidoreductase reactions. 7. 1. 2.- Hydron translocation linked to the hydrolysis of a nucleoside triphosphate. 7. 1. 3.- Hydron translocation linked to the hydrolysis of diphosphate. 7. 2. -.- Catalysing the translocation of inorganic cations. 7. 2. 1.- Linked to oxidoreductase reactions. 7. 2. 2.- Linked to the hydrolysis of a nucleoside triphosphate. 7. 2. 3.- Linked to the hydrolysis of diphosphate. 7. 2. 4.- Linked to decarboxylation. 7. 3. -.- Catalysing the translocation of inorganic anions and their chelates. 7. 3. 2.- Linked to the hydrolysis of a nucleoside triphosphate. 7. 4. -.- Catalysing the translocation amino acids and peptides. 7. 4. 2.- Linked to the hydrolysis of a nucleoside triphosphate. 7. 5. -.- Catalysing the translocation carbohydrates and their derivatives. 7. 5. 2.- Linked to the hydrolysis of a nucleoside triphosphate. 7. 6. -.- Catalysing the translocation of other compounds. 7. 6. 2.- Linked to the hydrolysis of a nucleoside triphosphate. ---------------------------------------------------------------------------- Copyrighted by the SIB Swiss Institute of Bioinformatics and distributed under the Creative Commons Attribution (CC BY 4.0) License ----------------------------------------------------------------------------