data_1UQD

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1UQD
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    1UQD
_pdbx_vrpt_summary.PDB_deposition_date         1996-06-26
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2022-03-02
_pdbx_vrpt_summary.report_creation_date        2022-08-21:11:57
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,coreclust,chemicalshifts,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
_pdbx_vrpt_entity.id           1
_pdbx_vrpt_entity.type         polymer
_pdbx_vrpt_entity.description  "DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')"
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  1  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  2.72  1.43  134  205  
2  1  1  B  B  2.71  1.43  134  205  
#
_pdbx_vrpt_summary_geometry.ordinal                 1
_pdbx_vrpt_summary_geometry.clashscore_full_length  2.65
_pdbx_vrpt_summary_geometry.num_H_reduce            138
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ          268
_pdbx_vrpt_summary_geometry.bonds_RMSZ              1.43
_pdbx_vrpt_summary_geometry.num_angles_RMSZ         410
_pdbx_vrpt_summary_geometry.angles_RMSZ             2.71
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_plane_outliers
 1  1  1  A  1  DC  A   1  .  ?        1     1     ?  
 2  1  1  A  2  DG  A   2  .  ?        ?     1     1  
 3  1  1  A  3  DA  A   3  .  ?        ?     ?     1  
 4  1  1  A  4  DT  A   4  .  ?        5     ?     ?  
 5  1  1  A  5  DC  A   5  .  ?        3     ?     ?  
 6  1  1  A  6  DG  A   6  .  ?        2     ?     1  
 7  1  1  B  1  DC  B   7  .  ?        1     ?     ?  
 8  1  1  B  2  DG  B   8  .  ?        ?     ?     1  
 9  1  1  B  3  DA  B   9  .  ?        ?     ?     1  
10  1  1  B  4  DT  B  10  .  ?        5     ?     ?  
11  1  1  B  5  DC  B  11  .  ?        3     ?     ?  
12  1  1  B  6  DG  B  12  .  ?        2     ?     1  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  12  18  1.39  28  2.18  molprobity  
 2   2  11  25  1.20  39  2.02  molprobity  
 3   3  11  24  1.39  37  1.91  molprobity  
 4   4  12  22  1.65  34  3.98  molprobity  
 5   5  11  21  1.68  32  3.45  molprobity  
 6   6  12  24  1.27  35  2.21  molprobity  
 7   7  12  18  1.39  28  2.08  molprobity  
 8   8  11  25  1.19  39  2.01  molprobity  
 9   9  11  24  1.39  37  1.90  molprobity  
10  10  12  22  1.65  34  3.98  molprobity  
11  11  11  21  1.68  32  3.45  molprobity  
12  12  12  24  1.25  35  2.20  molprobity  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
1  1  "H2''"  1  0.40  2.51  
2  2  C8      1  0.40  2.51  
#
loop_
_pdbx_vrpt_instance_intra_plane_outliers.ordinal
_pdbx_vrpt_instance_intra_plane_outliers.instance_id
_pdbx_vrpt_instance_intra_plane_outliers.type
_pdbx_vrpt_instance_intra_plane_outliers.plane_rmsd
1   2  sidechain  0.08  
2   3  sidechain  0.08  
3   6  sidechain  0.08  
4   8  sidechain  0.08  
5   9  sidechain  0.08  
6  12  sidechain  0.08  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
 1   1  "O4'"  "C4'"  "C3'"  110.269  106.000  0.600   7.12  
 2   4  "C1'"  "O4'"  "C4'"  104.605  110.100  1.000  -5.50  
 3   4  "C4'"  "C3'"  "C2'"   96.845  103.100  0.900  -6.95  
 4   4  "C5'"  "C4'"  "O4'"  118.882  109.300  1.900   5.04  
 5   4  "O4'"  "C1'"  N1     113.984  108.000  0.700   8.55  
 6   4  "O4'"  "C4'"  "C3'"  114.920  106.000  0.600  14.87  
 7   5  "C4'"  "C3'"  "C2'"   98.189  103.100  0.900  -5.46  
 8   5  C6     N1     "C1'"  114.530  120.800  1.200  -5.22  
 9   5  "O4'"  "C4'"  "C3'"  113.578  106.000  0.600  12.63  
10   6  "C5'"  "C4'"  "O4'"  120.941  109.300  1.900   6.13  
11   6  "O4'"  "C4'"  "C3'"  109.439  106.000  0.600   5.73  
12   7  "O4'"  "C4'"  "C3'"  109.986  106.000  0.600   6.64  
13  10  "C1'"  "O4'"  "C4'"  104.639  110.100  1.000  -5.46  
14  10  "C4'"  "C3'"  "C2'"   96.815  103.100  0.900  -6.98  
15  10  "C5'"  "C4'"  "O4'"  118.905  109.300  1.900   5.05  
16  10  "O4'"  "C1'"  N1     113.991  108.000  0.700   8.56  
17  10  "O4'"  "C4'"  "C3'"  114.917  106.000  0.600  14.86  
18  11  "C4'"  "C3'"  "C2'"   98.166  103.100  0.900  -5.48  
19  11  C6     N1     "C1'"  114.551  120.800  1.200  -5.21  
20  11  "O4'"  "C4'"  "C3'"  113.581  106.000  0.600  12.63  
21  12  "C5'"  "C4'"  "O4'"  120.986  109.300  1.900   6.15  
22  12  "O4'"  "C4'"  "C3'"  109.363  106.000  0.600   5.61  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
