data_1NM4

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1NM4
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    1NM4
_pdbx_vrpt_summary.PDB_deposition_date         2003-01-09
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2022-02-23
_pdbx_vrpt_summary.report_creation_date        2022-08-20:12:58
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,coreclust,chemicalshifts,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
_pdbx_vrpt_entity.id           1
_pdbx_vrpt_entity.type         polymer
_pdbx_vrpt_entity.description  "Copper resistance protein C"
#
_pdbx_vrpt_asym.label_asym_id  A
_pdbx_vrpt_asym.entity_id      1
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      0.95
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.53
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   756
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  1027
#
_pdbx_vrpt_summary_geometry.ordinal                                    1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers_full_length  4.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers_full_length       17.28
_pdbx_vrpt_summary_geometry.clashscore_full_length                     2.69
_pdbx_vrpt_summary_geometry.num_H_reduce                               747
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                             756
_pdbx_vrpt_summary_geometry.bonds_RMSZ                                 0.53
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                            1027
_pdbx_vrpt_summary_geometry.angles_RMSZ                                0.95
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_clashes
  1  1  1  A    1  HIS  A    1  .  ?        1  
  2  1  1  A    2  PRO  A    2  .  ?        1  
  3  1  1  A    3  LYS  A    3  .  ?        ?  
  4  1  1  A    4  LEU  A    4  .  ?        ?  
  5  1  1  A    5  VAL  A    5  .  ?        ?  
  6  1  1  A    6  SER  A    6  .  ?        ?  
  7  1  1  A    7  SER  A    7  .  ?        ?  
  8  1  1  A    8  THR  A    8  .  ?        ?  
  9  1  1  A    9  PRO  A    9  .  ?        ?  
 10  1  1  A   10  ALA  A   10  .  ?        ?  
 11  1  1  A   11  GLU  A   11  .  ?        ?  
 12  1  1  A   12  GLY  A   12  .  ?        ?  
 13  1  1  A   13  SER  A   13  .  ?        ?  
 14  1  1  A   14  GLU  A   14  .  ?        ?  
 15  1  1  A   15  GLY  A   15  .  ?        ?  
 16  1  1  A   16  ALA  A   16  .  ?        ?  
 17  1  1  A   17  ALA  A   17  .  ?        ?  
 18  1  1  A   18  PRO  A   18  .  ?        ?  
 19  1  1  A   19  ALA  A   19  .  ?        ?  
 20  1  1  A   20  LYS  A   20  .  ?        ?  
 21  1  1  A   21  ILE  A   21  .  ?        ?  
 22  1  1  A   22  GLU  A   22  .  ?        ?  
 23  1  1  A   23  LEU  A   23  .  ?        ?  
 24  1  1  A   24  HIS  A   24  .  ?        ?  
 25  1  1  A   25  PHE  A   25  .  ?        ?  
 26  1  1  A   26  SER  A   26  .  ?        ?  
 27  1  1  A   27  GLU  A   27  .  ?        ?  
 28  1  1  A   28  ASN  A   28  .  ?        ?  
 29  1  1  A   29  LEU  A   29  .  ?        1  
 30  1  1  A   30  VAL  A   30  .  ?        ?  
 31  1  1  A   31  THR  A   31  .  ?        2  
 32  1  1  A   32  GLN  A   32  .  ?        ?  
 33  1  1  A   33  PHE  A   33  .  ?        ?  
 34  1  1  A   34  SER  A   34  .  ?        ?  
 35  1  1  A   35  GLY  A   35  .  ?        ?  
 36  1  1  A   36  ALA  A   36  .  ?        ?  
 37  1  1  A   37  LYS  A   37  .  ?        ?  
 38  1  1  A   38  LEU  A   38  .  ?        ?  
 39  1  1  A   39  VAL  A   39  .  ?        1  
 40  1  1  A   40  MET  A   40  .  ?        ?  
 41  1  1  A   41  THR  A   41  .  ?        ?  
 42  1  1  A   42  ALA  A   42  .  ?        ?  
 43  1  1  A   43  MET  A   43  .  ?        ?  
 44  1  1  A   44  PRO  A   44  .  ?        ?  
 45  1  1  A   45  GLY  A   45  .  ?        ?  
 46  1  1  A   46  MET  A   46  .  ?        ?  
 47  1  1  A   47  GLU  A   47  .  ?        ?  
 48  1  1  A   48  HIS  A   48  .  ?        ?  
 49  1  1  A   49  SER  A   49  .  ?        ?  
 50  1  1  A   50  PRO  A   50  .  ?        ?  
 51  1  1  A   51  MET  A   51  .  ?        ?  
 52  1  1  A   52  ALA  A   52  .  ?        1  
 53  1  1  A   53  VAL  A   53  .  ?        ?  
 54  1  1  A   54  LYS  A   54  .  ?        ?  
 55  1  1  A   55  ALA  A   55  .  ?        ?  
 56  1  1  A   56  ALA  A   56  .  ?        ?  
 57  1  1  A   57  VAL  A   57  .  ?        ?  
 58  1  1  A   58  SER  A   58  .  ?        ?  
 59  1  1  A   59  GLY  A   59  .  ?        ?  
 60  1  1  A   60  GLY  A   60  .  ?        ?  
 61  1  1  A   61  GLY  A   61  .  ?        ?  
 62  1  1  A   62  ASP  A   62  .  ?        ?  
 63  1  1  A   63  PRO  A   63  .  ?        ?  
 64  1  1  A   64  LYS  A   64  .  ?        ?  
 65  1  1  A   65  THR  A   65  .  ?        ?  
 66  1  1  A   66  MET  A   66  .  ?        ?  
 67  1  1  A   67  VAL  A   67  .  ?        ?  
 68  1  1  A   68  ILE  A   68  .  ?        ?  
 69  1  1  A   69  THR  A   69  .  ?        ?  
 70  1  1  A   70  PRO  A   70  .  ?        ?  
 71  1  1  A   71  ALA  A   71  .  ?        ?  
 72  1  1  A   72  SER  A   72  .  ?        ?  
 73  1  1  A   73  PRO  A   73  .  ?        ?  
 74  1  1  A   74  LEU  A   74  .  ?        ?  
 75  1  1  A   75  THR  A   75  .  ?        ?  
 76  1  1  A   76  ALA  A   76  .  ?        ?  
 77  1  1  A   77  GLY  A   77  .  ?        ?  
 78  1  1  A   78  THR  A   78  .  ?        ?  
 79  1  1  A   79  TYR  A   79  .  ?        ?  
 80  1  1  A   80  LYS  A   80  .  ?        ?  
 81  1  1  A   81  VAL  A   81  .  ?        ?  
 82  1  1  A   82  ASP  A   82  .  ?        ?  
 83  1  1  A   83  TRP  A   83  .  ?        ?  
 84  1  1  A   84  ARG  A   84  .  ?        ?  
 85  1  1  A   85  ALA  A   85  .  ?        1  
 86  1  1  A   86  VAL  A   86  .  ?        ?  
 87  1  1  A   87  SER  A   87  .  ?        ?  
 88  1  1  A   88  SER  A   88  .  ?        ?  
 89  1  1  A   89  ASP  A   89  .  ?        ?  
 90  1  1  A   90  THR  A   90  .  ?        ?  
 91  1  1  A   91  HIS  A   91  .  ?        ?  
 92  1  1  A   92  PRO  A   92  .  ?        ?  
 93  1  1  A   93  ILE  A   93  .  ?        ?  
 94  1  1  A   94  THR  A   94  .  ?        ?  
 95  1  1  A   95  GLY  A   95  .  ?        ?  
 96  1  1  A   96  SER  A   96  .  ?        ?  
 97  1  1  A   97  VAL  A   97  .  ?        ?  
 98  1  1  A   98  THR  A   98  .  ?        ?  
 99  1  1  A   99  PHE  A   99  .  ?        ?  
100  1  1  A  100  LYS  A  100  .  ?        ?  
101  1  1  A  101  VAL  A  101  .  ?        ?  
102  1  1  A  102  LYS  A  102  .  ?        ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
  1    1  m-70          ?       ?  ?         9  11  0.63  16  1.20  molprobity  
  2    2  Cg_endo   -75.5  -172.0  Allowed   7   8  0.65  11  1.12  molprobity  
  3    3  OUTLIER    62.6  -163.6  Allowed  13   9  0.58  11  1.05  molprobity  
  4    4  OUTLIER   -53.2   122.5  Favored  11   8  0.30  11  0.70  molprobity  
  5    5  t        -112.2   -43.4  Favored   9   7  0.32  10  0.73  molprobity  
  6    6  m        -136.2   153.7  Favored   5   6  0.40   8  0.52  molprobity  
  7    7  p        -154.2   156.4  Favored   5   6  0.48   8  0.78  molprobity  
  8    8  m        -126.5    80.3  Favored   7   7  0.41  11  0.82  molprobity  
  9    9  Cg_endo   -88.2   -79.0  OUTLIER   7   8  0.90  11  1.37  molprobity  
 10   10  ?         175.4    43.1  OUTLIER   5   5  0.47   7  0.54  molprobity  
 11   11  mt-10     -50.6    96.7  OUTLIER   6   9  0.44  12  0.88  molprobity  
 12   12  ?          55.6    29.0  Favored   3   4  0.54   5  0.42  molprobity  
 13   13  m         -61.8   137.7  Favored   5   6  0.16   8  0.50  molprobity  
 14   14  mt-10    -124.2   158.2  Favored   6   9  0.37  12  0.82  molprobity  
 15   15  ?         103.7  -129.6  Favored   3   4  0.29   5  0.62  molprobity  
 16   16  ?         -61.3   146.2  Favored   5   5  0.27   7  0.34  molprobity  
 17   17  ?         -57.0   144.3  Favored   5   5  0.32   8  0.43  molprobity  
 18   18  Cg_endo   -65.3   139.1  Favored   7   8  0.68  11  0.83  molprobity  
 19   19  ?         -63.3   -51.1  Favored   5   5  0.35   7  0.85  molprobity  
 20   20  pttt     -158.3   174.0  Favored  13   9  0.46  11  1.12  molprobity  
 21   21  mt       -119.9   114.4  Favored  11   8  0.29  11  1.15  molprobity  
 22   22  mt-10    -109.2   134.1  Favored   6   9  0.47  12  0.89  molprobity  
 23   23  mt       -130.6   123.2  Favored  11   8  0.43  11  0.76  molprobity  
 24   24  m170     -126.9   123.9  Favored   7  11  0.45  15  0.77  molprobity  
 25   25  m-85     -117.2   138.4  Favored   9  12  1.14  16  0.84  molprobity  
 26   26  m         -57.8   -46.2  Favored   5   6  0.39   8  0.58  molprobity  
 27   27  tp10      -79.0   137.7  Favored   6   9  0.43  12  1.21  molprobity  
 28   28  t-20      -80.5    81.6  Favored   6   8  0.45  11  0.71  molprobity  
 29   29  OUTLIER   -94.8  -152.9  Allowed  11   8  0.35  11  1.19  molprobity  
 30   30  t          81.9    59.4  OUTLIER   9   7  0.40  10  1.04  molprobity  
 31   31  OUTLIER   -82.9    43.2  Allowed   7   7  0.53  10  0.95  molprobity  
 32   32  tp60       70.6    30.1  Favored   8   9  0.46  12  0.52  molprobity  
 33   33  m-85     -144.8    35.7  Allowed   9  12  1.09  16  0.60  molprobity  
 34   34  m        -119.9   156.2  Favored   5   6  0.17   8  0.37  molprobity  
 35   35  ?        -179.3   177.2  Favored   3   4  0.31   5  0.77  molprobity  
 36   36  ?        -156.5   155.1  Favored   5   5  0.32   7  0.69  molprobity  
 37   37  mttt     -145.5   168.2  Favored  13   9  0.47  11  0.83  molprobity  
 38   38  tp       -120.5   142.2  Favored  11   8  0.37  11  0.96  molprobity  
 39   39  m        -131.2   144.9  Favored   9   7  0.29  10  1.60  molprobity  
 40   40  ptt?      -91.1   135.8  Favored   9   8  0.30  10  1.10  molprobity  
 41   41  t        -122.1    -1.4  Favored   7   7  0.33  10  0.65  molprobity  
 42   42  ?        -156.4   132.6  Favored   5   5  0.32   7  1.01  molprobity  
 43   43  OUTLIER  -148.1   158.3  Favored   9   8  0.57  11  1.32  molprobity  
 44   44  Cg_endo   -67.5   170.5  Favored   7   8  0.73  11  0.94  molprobity  
 45   45  ?          77.5   -53.0  Favored   3   4  0.47   5  0.51  molprobity  
 46   46  mmt      -102.6   -58.4  Allowed   9   8  0.42  10  0.86  molprobity  
 47   47  mt-10      46.5    35.4  Favored   6   9  0.49  12  0.77  molprobity  
 48   48  OUTLIER   -74.8   163.3  Favored   7  11  0.51  15  0.91  molprobity  
 49   49  m         -46.0   148.8  Allowed   5   6  0.33   9  1.05  molprobity  
 50   50  Cg_endo   -55.8   143.6  Favored   7   8  0.66  11  0.84  molprobity  
 51   51  OUTLIER  -150.2   149.9  Favored   9   8  0.35  10  0.58  molprobity  
 52   52  ?         -64.6   131.1  Favored   5   5  0.29   7  0.47  molprobity  
 53   53  OUTLIER  -113.3   164.4  Favored   9   7  0.23  10  1.31  molprobity  
 54   54  mttt      -80.7   103.0  Favored  13   9  0.46  11  0.69  molprobity  
 55   55  ?        -126.7   154.8  Favored   5   5  0.22   7  0.87  molprobity  
 56   56  ?        -115.2   129.4  Favored   5   5  0.38   7  0.71  molprobity  
 57   57  p        -100.2   124.7  Favored   9   7  0.40  10  1.10  molprobity  
 58   58  m        -129.5   178.2  Favored   5   6  0.40   8  0.63  molprobity  
 59   59  ?        -131.8   164.1  Favored   3   4  0.33   5  0.99  molprobity  
 60   60  ?         -73.9  -166.9  Favored   3   4  0.55   5  0.93  molprobity  
 61   61  ?         -69.2     5.1  Favored   3   4  0.72   5  0.94  molprobity  
 62   62  OUTLIER  -122.5   135.1  Favored   4   8  0.22  12  1.14  molprobity  
 63   63  Cg_endo   -62.6   -28.6  Favored   7   8  0.81  11  0.89  molprobity  
 64   64  pttt      -82.0     7.5  Favored  13   9  0.49  11  0.73  molprobity  
 65   65  m        -119.8    96.7  Favored   7   7  0.33  10  0.82  molprobity  
 66   66  tpp       -89.9   137.7  Favored   9   8  0.40  10  0.95  molprobity  
 67   67  t        -136.3   108.9  Favored   9   7  0.34  10  0.62  molprobity  
 68   68  mp       -102.4   125.8  Favored  11   8  0.27  11  1.00  molprobity  
 69   69  OUTLIER  -102.4   138.0  Favored   7   7  0.35  11  1.09  molprobity  
 70   70  Cg_endo   -66.0   141.8  Favored   7   8  0.71  11  0.89  molprobity  
 71   71  ?         -94.2   -30.8  Favored   5   5  0.18   7  0.50  molprobity  
 72   72  OUTLIER   -99.0   152.7  Favored   5   6  0.38   9  0.63  molprobity  
 73   73  Cg_endo   -64.0   107.4  Allowed   7   8  0.70  11  0.93  molprobity  
 74   74  mt        -53.6   117.8  Favored  11   8  0.40  11  0.52  molprobity  
 75   75  OUTLIER  -105.8   173.8  Favored   7   7  0.40  10  1.33  molprobity  
 76   76  ?         -48.3   130.6  Favored   5   5  0.37   7  0.44  molprobity  
 77   77  ?         153.0  -161.6  Favored   3   4  0.37   5  0.80  molprobity  
 78   78  m        -128.4   143.1  Favored   7   7  0.35  10  0.52  molprobity  
 79   79  m-85     -136.5   162.9  Favored   9  13  1.01  18  1.01  molprobity  
 80   80  tttt     -127.7   121.4  Favored  13   9  0.41  11  0.99  molprobity  
 81   81  t         -82.1   120.3  Favored   9   7  0.29  10  1.25  molprobity  
 82   82  m-20     -102.3   121.7  Favored   4   8  0.24  11  0.93  molprobity  
 83   83  p-90     -116.0   146.4  Favored  10  16  0.64  23  1.94  molprobity  
 84   84  mtt180   -133.4   112.3  Favored  13  11  0.68  14  0.81  molprobity  
 85   85  ?        -109.2   135.5  Favored   5   5  0.62   7  1.37  molprobity  
 86   86  t        -129.2   147.5  Favored   9   7  0.47  10  1.08  molprobity  
 87   87  t        -108.2   167.0  Favored   5   6  0.19   8  0.61  molprobity  
 88   88  m         -51.8   -55.1  Favored   5   6  0.17   8  0.79  molprobity  
 89   89  m-20      -78.3    45.9  Allowed   4   8  0.28  11  1.39  molprobity  
 90   90  p          57.4  -103.1  Allowed   7   7  0.43  10  1.14  molprobity  
 91   91  t-80       40.4    67.4  Favored   7  11  0.51  16  0.75  molprobity  
 92   92  Cg_endo   -69.3   137.9  Favored   7   8  0.89  11  0.98  molprobity  
 93   93  pt       -114.3   123.2  Favored  11   8  0.29  11  1.04  molprobity  
 94   94  p        -123.8   134.9  Favored   7   7  0.43  10  1.24  molprobity  
 95   95  ?        -160.8   171.9  Favored   3   4  0.47   5  0.86  molprobity  
 96   96  OUTLIER  -154.2   153.5  Favored   5   6  0.41   8  0.99  molprobity  
 97   97  t        -133.2   126.8  Favored   9   7  0.31  10  1.02  molprobity  
 98   98  OUTLIER   -98.5   151.6  Favored   7   7  0.37  10  0.76  molprobity  
 99   99  p90      -150.2   166.3  Favored   9  12  1.06  16  0.77  molprobity  
100  100  mttt     -121.7   157.2  Favored  13   9  0.42  11  0.96  molprobity  
101  101  t        -132.6   143.7  Favored   9   7  0.43  10  0.95  molprobity  
102  102  mttt          ?       ?  ?        13   9  0.71   8  0.84  molprobity  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
1   1  CB    1  0.41  2.98  
2   2  CD    1  0.41  2.98  
3  29  HD11  2  0.44  1.88  
4  31  HG23  3  0.45  2.11  
5  31  O     3  0.45  2.11  
6  39  HG12  4  0.41  1.92  
7  52  HA    4  0.41  1.92  
8  85  HB1   2  0.44  1.88  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
