data_4NFO

loop_
_pdbx_vrpt_database.id
_pdbx_vrpt_database.code
PDB  4NFO    
NDB  NA2783  
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    4NFO
_pdbx_vrpt_summary.PDB_deposition_date         2013-10-31
_pdbx_vrpt_summary.PDB_revision_number         3
_pdbx_vrpt_summary.PDB_revision_date           2024-02-28
_pdbx_vrpt_summary.RNA_suiteness               0.85
_pdbx_vrpt_summary.report_creation_date        2024-06-15:21:05
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,mogul,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      GCAGACUUAAGUCUGC  
2  non-polymer  SPERMINE          
3  water        water             
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  1  
C  1  
D  2  
E  3  
F  3  
G  3  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all   x-ray  
2  1.96  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore    
2  RSRZ_outliers_percent  
3  R_value_R_free         
4  RNAsuiteness_percent   
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   34.51  141614     ?     ?  
2  2  1   22.85    2705  1.96  1.96  
3  1  2  100.00  127900     ?     ?  
4  2  2  100.00    2539  1.96  1.96  
5  1  3   27.11  130704     ?     ?  
6  2  3   14.26    2580  1.96  1.96  
7  1  4   97.49    3102     ?     ?  
8  2  4   96.26    1124  1.42  2.50  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  100.00  
2  4  2  A  1  1  A  100.00  
3  3  2  B  1  1  B  100.00  
4  4  2  B  1  1  B  100.00  
5  3  2  C  1  1  C  100.00  
6  4  2  C  1  1  C  100.00  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  0.83  0.74  376  584  
2  1  1  B  B  0.84  0.74  376  584  
3  1  1  C  C  0.90  0.73  376  584  
#
_pdbx_vrpt_summary_geometry.ordinal          1
_pdbx_vrpt_summary_geometry.clashscore       8.26
_pdbx_vrpt_summary_geometry.num_H_reduce     548
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ   1128
_pdbx_vrpt_summary_geometry.bonds_RMSZ       0.74
_pdbx_vrpt_summary_geometry.num_angles_RMSZ  1752
_pdbx_vrpt_summary_geometry.angles_RMSZ      0.86
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 92.273
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            60.656
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         44.702
_pdbx_vrpt_summary_diffraction.I_over_sigma              2.35(1.97A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        9115
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.802
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.330
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.525
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.362
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.971
_pdbx_vrpt_summary_diffraction.twin_fraction             1/2*h-3/2*k,-1/2*h-1/2*k,-1/2*h+1/2*k-l:0.477;1/2*h+3/2*k,1/2*h-1/2*k,-1/2*h-1/2*k-l:0.458
_pdbx_vrpt_summary_diffraction.DCC_R                     0.22
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.26
_pdbx_vrpt_summary_diffraction.EDS_R                     0.21
_pdbx_vrpt_summary_diffraction.EDS_res_high              1.96
_pdbx_vrpt_summary_diffraction.EDS_res_low               35.79
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[54.824,55.569,27.178,0.000,-0.706,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.619
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 12.32% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         21
_pdbx_vrpt_summary_diffraction.centric_outliers          4
_pdbx_vrpt_summary_diffraction.data_completeness         92.71
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      443
_pdbx_vrpt_summary_diffraction.percent_free_reflections  4.86
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     0.00
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       1.96
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        35.81
_pdbx_vrpt_summary_diffraction.PDB_R                     0.22
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.24
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_symm_clashes
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
 1  1  1  A   1  G    A    1  .  ?        ?     ?     ?     ?     ?     ?  
 2  1  1  A   2  C    A    2  .  ?        ?     ?     ?     ?     ?     ?  
 3  1  1  A   3  A    A    3  .  ?        ?     ?     ?     ?     ?     ?  
 4  1  1  A   4  G    A    4  .  ?        ?     ?     ?     1     ?     ?  
 5  1  1  A   5  A    A    5  .  ?        1     ?     ?     ?     ?     ?  
 6  1  1  A   6  C    A    6  .  ?        ?     ?     ?     ?     ?     ?  
 7  1  1  A   7  U    A    7  .  ?        ?     ?     ?     ?     ?     ?  
 8  1  1  A   8  U    A    8  .  ?        ?     ?     ?     ?     ?     ?  
 9  1  1  A   9  A    A    9  .  ?        ?     ?     ?     ?     ?     ?  
10  1  1  A  10  A    A   10  .  ?        ?     ?     ?     ?     ?     ?  
11  1  1  A  11  G    A   11  .  ?        ?     ?     ?     ?     ?     ?  
12  1  1  A  12  U    A   12  .  ?        ?     ?     ?     ?     ?     ?  
13  1  1  A  13  C    A   13  .  ?        ?     ?     4     ?     ?     ?  
14  1  1  A  14  U    A   14  .  ?        ?     ?     ?     ?     ?     ?  
15  1  1  A  15  G    A   15  .  ?        ?     ?     ?     ?     ?     ?  
16  1  1  A  16  C    A   16  .  ?        ?     ?     ?     ?     ?     ?  
17  1  1  B   1  G    B    1  .  ?        ?     ?     ?     ?     ?     ?  
18  1  1  B   2  C    B    2  .  ?        ?     ?     ?     ?     ?     ?  
19  1  1  B   3  A    B    3  .  ?        ?     ?     ?     ?     ?     ?  
20  1  1  B   4  G    B    4  .  ?        ?     ?     ?     ?     ?     ?  
21  1  1  B   5  A    B    5  .  ?        1     ?     ?     ?     ?     ?  
22  1  1  B   6  C    B    6  .  ?        ?     ?     ?     ?     ?     ?  
23  1  1  B   7  U    B    7  .  ?        ?     ?     ?     ?     ?     ?  
24  1  1  B   8  U    B    8  .  ?        ?     ?     ?     ?     ?     ?  
25  1  1  B   9  A    B    9  .  ?        ?     ?     ?     ?     ?     ?  
26  1  1  B  10  A    B   10  .  ?        ?     ?     ?     ?     ?     ?  
27  1  1  B  11  G    B   11  .  ?        ?     ?     ?     ?     ?     ?  
28  1  1  B  12  U    B   12  .  ?        ?     ?     ?     ?     ?     ?  
29  1  1  B  13  C    B   13  .  ?        ?     ?     ?     ?     ?     ?  
30  1  1  B  14  U    B   14  .  ?        ?     ?     ?     ?     ?     ?  
31  1  1  B  15  G    B   15  .  ?        ?     ?     ?     ?     ?     ?  
32  1  1  B  16  C    B   16  .  ?        ?     ?     ?     ?     ?     ?  
33  1  1  C   1  G    C    1  .  ?        1     ?     ?     ?     ?     ?  
34  1  1  C   2  C    C    2  .  ?        ?     ?     ?     ?     ?     ?  
35  1  1  C   3  A    C    3  .  ?        ?     ?     ?     ?     ?     ?  
36  1  1  C   4  G    C    4  .  ?        ?     2     ?     ?     ?     ?  
37  1  1  C   5  A    C    5  .  ?        ?     ?     ?     ?     ?     ?  
38  1  1  C   6  C    C    6  .  ?        ?     ?     ?     ?     ?     ?  
39  1  1  C   7  U    C    7  .  ?        ?     ?     ?     ?     ?     ?  
40  1  1  C   8  U    C    8  .  ?        ?     ?     ?     ?     ?     ?  
41  1  1  C   9  A    C    9  .  ?        ?     ?     ?     ?     ?     ?  
42  1  1  C  10  A    C   10  .  ?        ?     ?     ?     ?     ?     ?  
43  1  1  C  11  G    C   11  .  ?        ?     ?     ?     ?     ?     ?  
44  1  1  C  12  U    C   12  .  ?        ?     ?     3     ?     ?     ?  
45  1  1  C  13  C    C   13  .  ?        ?     ?     5     ?     ?     ?  
46  1  1  C  14  U    C   14  .  ?        ?     ?     ?     ?     ?     ?  
47  1  1  C  15  G    C   15  .  ?        ?     ?     ?     ?     ?     ?  
48  1  1  C  16  C    C   16  .  ?        ?     ?     ?     ?     ?     ?  
49  1  2  D   .  SPM  C  101  .  ?        ?     ?    14     1     4     7  
50  1  3  E   .  HOH  A  101  .  ?        ?     ?     ?     ?     ?     ?  
51  1  3  E   .  HOH  A  102  .  ?        ?     ?     ?     ?     ?     ?  
52  1  3  E   .  HOH  A  103  .  ?        ?     ?     ?     ?     ?     ?  
53  1  3  E   .  HOH  A  104  .  ?        ?     ?     ?     ?     ?     ?  
54  1  3  E   .  HOH  A  105  .  ?        ?     ?     ?     ?     ?     ?  
55  1  3  E   .  HOH  A  106  .  ?        ?     ?     ?     ?     ?     ?  
56  1  3  F   .  HOH  B  101  .  ?        ?     ?     ?     ?     ?     ?  
57  1  3  F   .  HOH  B  102  .  ?        ?     ?     ?     ?     ?     ?  
58  1  3  F   .  HOH  B  103  .  ?        ?     ?     ?     ?     ?     ?  
59  1  3  F   .  HOH  B  104  .  ?        ?     ?     ?     ?     ?     ?  
60  1  3  F   .  HOH  B  105  .  ?        ?     ?     ?     ?     ?     ?  
61  1  3  F   .  HOH  B  106  .  ?        ?     ?     ?     ?     ?     ?  
62  1  3  F   .  HOH  B  107  .  ?        ?     ?     ?     ?     ?     ?  
63  1  3  G   .  HOH  C  201  .  ?        ?     ?     ?     ?     ?     ?  
64  1  3  G   .  HOH  C  202  .  ?        ?     ?     ?     ?     ?     ?  
65  1  3  G   .  HOH  C  203  .  ?        ?     ?     ?     ?     ?     ?  
66  1  3  G   .  HOH  C  204  .  ?        ?     ?     ?     ?     ?     ?  
67  1  3  G   .  HOH  C  205  .  ?        ?     ?     ?     ?     ?     ?  
68  1  3  G   .  HOH  C  206  .  ?        ?     ?     ?     ?     ?     ?  
69  1  3  G   .  HOH  C  207  .  ?        ?     ?     ?     ?     ?     ?  
70  1  3  G   .  HOH  C  208  .  ?        ?     ?     ?     ?     ?     ?  
71  1  3  G   .  HOH  C  209  .  ?        ?     ?     ?     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.RNA_score
_pdbx_vrpt_model_instance_geometry.RNA_suite
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
 1   1  0.00  NotAvailable    12  58.720    23  0.71    37  0.60  molprobity  1.000  
 2   2  0.79  Rotameric       11  57.780    22  0.90    34  0.74  molprobity  1.000  
 3   3  0.88  Rotameric       11  52.840    25  0.57    39  0.54  molprobity  1.000  
 4   4  0.91  Rotameric       11  62.340    26  0.64    41  0.92  molprobity  1.000  
 5   5  0.77  Rotameric       11  53.700    25  1.22    39  0.63  molprobity  1.000  
 6   6  0.94  Rotameric       11  54.540    22  0.74    34  0.99  molprobity  1.000  
 7   7  0.92  Rotameric       10  49.830    22  0.87    34  0.89  molprobity  1.000  
 8   8  0.88  Rotameric       10  52.200    22  0.65    34  0.89  molprobity  1.000  
 9   9  0.83  Rotameric       11  55.420    25  0.64    39  0.80  molprobity  1.000  
10  10  0.93  Rotameric       11  56.600    25  0.52    39  0.63  molprobity  1.000  
11  11  0.86  Rotameric       11  53.720    26  0.71    41  0.81  molprobity  1.000  
12  12  0.80  Rotameric       10  51.310    22  0.83    34  1.14  molprobity  1.000  
13  13  0.87  Rotameric       11  53.740    22  0.76    34  0.95  molprobity  1.000  
14  14  0.49  Rotameric       10  48.990    22  0.82    34  1.09  molprobity  1.000  
15  15  0.77  Rotameric       11  58.010    26  0.49    41  0.76  molprobity  1.000  
16  16  0.96  Rotameric       12  64.210    21  0.48    30  0.75  molprobity  1.000  
17  17  0.00  NotAvailable    12  60.190    23  0.63    37  0.56  molprobity  1.000  
18  18  0.77  Rotameric       11  59.500    22  0.79    34  0.74  molprobity  1.000  
19  19  0.89  Rotameric       11  57.740    25  0.58    39  0.69  molprobity  1.000  
20  20  0.85  Rotameric       11  63.380    26  0.65    41  0.83  molprobity  1.000  
21  21  0.78  Rotameric       11  53.760    25  1.43    39  0.74  molprobity  1.000  
22  22  0.94  Rotameric       11  52.140    22  0.55    34  1.03  molprobity  1.000  
23  23  0.92  Rotameric       10  48.080    22  0.62    34  1.07  molprobity  1.000  
24  24  0.89  Rotameric       10  52.410    22  0.63    34  1.06  molprobity  1.000  
25  25  0.86  Rotameric       11  54.330    25  0.56    39  0.68  molprobity  1.000  
26  26  0.96  Rotameric       11  55.270    25  0.60    39  0.68  molprobity  1.000  
27  27  0.83  Rotameric       11  51.260    26  0.74    41  0.75  molprobity  1.000  
28  28  0.87  Rotameric       10  49.600    22  0.80    34  0.83  molprobity  1.000  
29  29  0.92  Rotameric       11  52.360    22  0.76    34  1.05  molprobity  1.000  
30  30  0.57  Rotameric       10  49.200    22  0.74    34  0.95  molprobity  1.000  
31  31  0.82  Rotameric       11  57.990    26  0.62    41  0.78  molprobity  1.000  
32  32  0.98  Rotameric       12  63.180    21  0.57    30  0.81  molprobity  1.000  
33  33  0.00  NotAvailable    12  56.220    23  1.17    37  0.50  molprobity  1.000  
34  34  0.82  Rotameric       11  57.780    22  0.90    34  0.83  molprobity  1.000  
35  35  0.92  Rotameric       11  53.760    25  0.49    39  0.71  molprobity  1.000  
36  36  0.92  Rotameric       11  59.780    26  0.63    41  1.37  molprobity  1.000  
37  37  0.79  Rotameric       11  54.950    25  0.73    39  0.63  molprobity  1.000  
38  38  0.99  Rotameric       11  52.970    22  0.63    34  1.03  molprobity  1.000  
39  39  0.86  Rotameric       10  49.050    22  0.73    34  0.91  molprobity  1.000  
40  40  0.86  Rotameric       10  54.000    22  0.56    34  0.74  molprobity  1.000  
41  41  0.88  Rotameric       11  57.170    25  0.52    39  1.00  molprobity  1.000  
42  42  0.89  Rotameric       11  59.670    25  0.55    39  0.65  molprobity  1.000  
43  43  0.80  Rotameric       11  55.140    26  0.64    41  0.87  molprobity  1.000  
44  44  0.81  Rotameric       10  51.790    22  0.88    34  1.12  molprobity  1.000  
45  45  0.89  Rotameric       11  53.560    22  1.02    34  1.25  molprobity  1.000  
46  46  0.56  Rotameric       10  47.420    22  0.66    34  0.97  molprobity  1.000  
47  47  0.87  Rotameric       11  57.410    26  0.71    41  0.59  molprobity  1.000  
48  48  0.98  Rotameric       12  64.500    21  0.52    30  0.70  molprobity  1.000  
49  49     ?  ?               26  64.050    13  0.66    12  2.11  mogul       1.000  
50  50     ?  ?                ?  55.530     ?     ?     ?     ?  ?           1.000  
51  51     ?  ?                ?  53.320     ?     ?     ?     ?  ?           1.000  
52  52     ?  ?                ?  61.560     ?     ?     ?     ?  ?           1.000  
53  53     ?  ?                ?  57.150     ?     ?     ?     ?  ?           1.000  
54  54     ?  ?                ?  53.670     ?     ?     ?     ?  ?           1.000  
55  55     ?  ?                ?  55.840     ?     ?     ?     ?  ?           1.000  
56  56     ?  ?                ?  57.490     ?     ?     ?     ?  ?           1.000  
57  57     ?  ?                ?  53.330     ?     ?     ?     ?  ?           1.000  
58  58     ?  ?                ?  49.990     ?     ?     ?     ?  ?           1.000  
59  59     ?  ?                ?  51.750     ?     ?     ?     ?  ?           1.000  
60  60     ?  ?                ?  47.210     ?     ?     ?     ?  ?           1.000  
61  61     ?  ?                ?  61.370     ?     ?     ?     ?  ?           1.000  
62  62     ?  ?                ?  54.100     ?     ?     ?     ?  ?           1.000  
63  63     ?  ?                ?  54.940     ?     ?     ?     ?  ?           1.000  
64  64     ?  ?                ?  55.880     ?     ?     ?     ?  ?           1.000  
65  65     ?  ?                ?  52.060     ?     ?     ?     ?  ?           1.000  
66  66     ?  ?                ?  51.530     ?     ?     ?     ?  ?           1.000  
67  67     ?  ?                ?  52.970     ?     ?     ?     ?  ?           1.000  
68  68     ?  ?                ?  51.660     ?     ?     ?     ?  ?           1.000  
69  69     ?  ?                ?  47.930     ?     ?     ?     ?  ?           1.000  
70  70     ?  ?                ?  52.780     ?     ?     ?     ?  ?           1.000  
71  71     ?  ?                ?  60.210     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1  13  O2       1  1.12  1.49  
 2  13  "H1'"    2  0.64  1.80  
 3  13  "H1'"    3  0.42  2.50  
 4  13  "C1'"    4  0.45  2.45  
 5  44  "O2'"    5  0.60  2.49  
 6  44  "O2'"    6  0.56  2.32  
 7  44  "O2'"    7  0.47  2.14  
 8  45  "H5'"    8  0.95  1.80  
 9  45  "H5'"    9  0.93  1.98  
10  45  "H5'"   10  0.72  1.70  
11  45  "C5'"   11  0.72  2.19  
12  45  "C5'"   12  0.47  2.77  
13  49  H132     1  1.12  1.49  
14  49  N14      8  0.95  1.80  
15  49  N14      6  0.56  2.32  
16  49  C13      9  0.93  1.98  
17  49  C13     12  0.47  2.77  
18  49  H131    11  0.72  2.19  
19  49  H131    10  0.72  1.70  
20  49  H82      2  0.64  1.80  
21  49  H82      4  0.45  2.45  
22  49  C12      5  0.60  2.49  
23  49  H22     13  0.57  1.87  
24  49  H92     13  0.57  1.87  
25  49  H122     7  0.47  2.14  
26  49  C11      3  0.42  2.50  
#
loop_
_pdbx_vrpt_instance_symm_clashes.ordinal
_pdbx_vrpt_instance_symm_clashes.instance_id
_pdbx_vrpt_instance_symm_clashes.label_atom_id
_pdbx_vrpt_instance_symm_clashes.scid
_pdbx_vrpt_instance_symm_clashes.symop
_pdbx_vrpt_instance_symm_clashes.clashmag
_pdbx_vrpt_instance_symm_clashes.dist
1   4  N2   0  1_555  0.09  2.11  
2  49  N14  0  2_756  0.09  2.11  
#
loop_
_pdbx_vrpt_instance_intra_bond_outliers.ordinal
_pdbx_vrpt_instance_intra_bond_outliers.instance_id
_pdbx_vrpt_instance_intra_bond_outliers.atom_1
_pdbx_vrpt_instance_intra_bond_outliers.atom_2
_pdbx_vrpt_instance_intra_bond_outliers.obs
_pdbx_vrpt_instance_intra_bond_outliers.mean
_pdbx_vrpt_instance_intra_bond_outliers.stdev
_pdbx_vrpt_instance_intra_bond_outliers.Z
_pdbx_vrpt_instance_intra_bond_outliers.link
1   5  "O3'"  P  1.673  1.607  0.012  5.48  Y  
2  21  "O3'"  P  1.684  1.607  0.012  6.39  Y  
3  33  "O3'"  P  1.670  1.607  0.012  5.28  Y  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
1  36  "O5'"  P  OP1  117.043  110.700  1.200   5.29  
2  36  "O5'"  P  OP2  101.091  105.700  0.900  -5.12  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
1  49  C3   C4   N5   122.39  112.14  448  2.70   3.80  0.07  
2  49  C6   N5   C4   124.70  113.45  831  4.72   2.39  0.59  
3  49  C7   C6   N5   123.82  112.14  448  2.70   4.33  0.71  
4  49  C11  C12  C13  104.80  114.28  349  3.66  -2.59  1.51  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
1  49  C3   C4   N5   C6     26.54  130.74   500  35.18  24.53  0.00  
2  49  C7   C6   N5   C4    121.51   49.20   500   9.82   0.89  1.00  
3  49  N5   C6   C7   C8   -102.61   58.01  3173  17.60   2.61  0.38  
4  49  C6   C7   C8   C9     34.51  126.70  3633  33.00   0.43  0.17  
5  49  C7   C8   C9   N10   135.89   51.44  3173  18.98   4.83  0.22  
6  49  C8   C9   N10  C11    13.99  143.29   500  35.18  37.08  0.00  
7  49  N10  C11  C12  C13  -145.00   67.47  1315  24.23   2.21  0.46  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
 1   1  20  0.876  0.153   0.449  
 2   2  20  0.893  0.135   0.098  
 3   3  22  0.923  0.122  -0.198  
 4   4  23  0.904  0.125  -0.031  
 5   5  22  0.937  0.111  -0.366  
 6   6  20  0.945  0.118  -0.150  
 7   7  20  0.931  0.097  -0.543  
 8   8  20  0.921  0.112  -0.363  
 9   9  22  0.902  0.109  -0.397  
10  10  22  0.893  0.141   0.093  
11  11  23  0.913  0.123  -0.065  
12  12  20  0.943  0.126  -0.195  
13  13  20  0.921  0.125  -0.048  
14  14  20  0.929  0.109  -0.399  
15  15  23  0.926  0.110  -0.288  
16  16  20  0.931  0.117  -0.164  
17  17  20  0.867  0.138   0.192  
18  18  20  0.914  0.119  -0.135  
19  19  22  0.837  0.145   0.155  
20  20  23  0.863  0.142   0.260  
21  21  22  0.894  0.123  -0.182  
22  22  20  0.895  0.130   0.025  
23  23  20  0.946  0.107  -0.423  
24  24  20  0.945  0.121  -0.255  
25  25  22  0.916  0.117  -0.274  
26  26  22  0.898  0.147   0.185  
27  27  23  0.914  0.117  -0.168  
28  28  20  0.931  0.128  -0.171  
29  29  20  0.891  0.139   0.156  
30  30  20  0.924  0.101  -0.495  
31  31  23  0.935  0.115  -0.202  
32  32  20  0.922  0.125  -0.048  
33  33  20  0.850  0.133   0.106  
34  34  20  0.900  0.099  -0.426  
35  35  22  0.910  0.115  -0.305  
36  36  23  0.869  0.151   0.414  
37  37  22  0.931  0.105  -0.458  
38  38  20  0.934  0.131   0.039  
39  39  20  0.950  0.114  -0.339  
40  40  20  0.932  0.115  -0.327  
41  41  22  0.902  0.115  -0.305  
42  42  22  0.890  0.148   0.201  
43  43  23  0.893  0.134   0.123  
44  44  20  0.941  0.104  -0.459  
45  45  20  0.907  0.137   0.127  
46  46  20  0.905  0.140  -0.026  
47  47  23  0.893  0.130   0.055  
48  48  20  0.915  0.114  -0.208  
49  49  14  0.774  0.399       ?  
50  50   1  0.631  0.395       ?  
51  51   1  0.877  0.397       ?  
52  52   1  0.601  0.328       ?  
53  53   1  0.620  0.191       ?  
54  54   1  0.717  0.221       ?  
55  55   1  0.817  0.433       ?  
56  56   1  0.271  0.334       ?  
57  57   1  0.868  0.170       ?  
58  58   1  0.783  0.707       ?  
59  59   1  0.704  0.173       ?  
60  60   1  0.898  0.988       ?  
61  61   1  0.557  0.202       ?  
62  62   1  0.726  0.158       ?  
63  63   1  0.924  0.189       ?  
64  64   1  0.869  0.259       ?  
65  65   1  0.895  0.150       ?  
66  66   1  0.791  0.550       ?  
67  67   1  0.870  0.213       ?  
68  68   1  0.690  0.390       ?  
69  69   1  0.933  0.270       ?  
70  70   1  0.733  0.179       ?  
71  71   1  0.690  0.224       ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  eds          2.37.1                                                                Y  
4  dcc          '"2.27  (2023-04-10)"'                                                Y  
5  xtriage      1.13                                                                  Y  
6  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
