data_1IFL

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1IFL
#
_pdbx_vrpt_summary.entry_id                    1IFL
_pdbx_vrpt_summary.PDB_deposition_date         1994-01-31
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2024-02-07
_pdbx_vrpt_summary.report_creation_date        2024-01-30:22:07
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
_pdbx_vrpt_entity.id           1
_pdbx_vrpt_entity.type         polymer
_pdbx_vrpt_entity.description  INOVIRUS
#
_pdbx_vrpt_asym.label_asym_id  A
_pdbx_vrpt_asym.entity_id      1
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  x-ray  
2  5.0  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   83.38  141614     ?     ?  
2  2  1   94.30    1000  3.82  6.16  
3  1  2  100.00  138981     ?     ?  
4  2  2  100.00    1146  3.80  6.20  
5  1  3   50.02  138945     ?     ?  
6  2  3   70.05    1122  3.80  6.20  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  100.00  
2  4  2  A  1  1  A  100.00  
3  5  3  A  1  1  A   50.02  
4  6  3  A  1  1  A   70.05  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      1.62
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       1.07
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   407
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  554
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       2.27
_pdbx_vrpt_summary_geometry.clashscore                     2.44
_pdbx_vrpt_summary_geometry.num_H_reduce                   420
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 407
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     1.07
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                554
_pdbx_vrpt_summary_geometry.angles_RMSZ                    1.62
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
 1  1  1  A   1  ALA  A   1  .  ?        ?     ?     ?  
 2  1  1  A   2  GLU  A   2  .  ?        1     ?     ?  
 3  1  1  A   3  PRO  A   3  .  ?        ?     ?     ?  
 4  1  1  A   4  ASN  A   4  .  ?        ?     ?     ?  
 5  1  1  A   5  ALA  A   5  .  ?        ?     ?     ?  
 6  1  1  A   6  ALA  A   6  .  ?        ?     ?     ?  
 7  1  1  A   7  THR  A   7  .  ?        ?     ?     ?  
 8  1  1  A   8  ASN  A   8  .  ?        ?     ?     ?  
 9  1  1  A   9  TYR  A   9  .  ?        ?     ?     ?  
10  1  1  A  10  ALA  A  10  .  ?        ?     ?     ?  
11  1  1  A  11  THR  A  11  .  ?        ?     ?     ?  
12  1  1  A  12  GLU  A  12  .  ?        1     ?     ?  
13  1  1  A  13  ALA  A  13  .  ?        ?     ?     ?  
14  1  1  A  14  MET  A  14  .  ?        ?     ?     ?  
15  1  1  A  15  ASP  A  15  .  ?        1     2     ?  
16  1  1  A  16  SER  A  16  .  ?        ?     ?     ?  
17  1  1  A  17  LEU  A  17  .  ?        ?     ?     ?  
18  1  1  A  18  LYS  A  18  .  ?        ?     ?     ?  
19  1  1  A  19  THR  A  19  .  ?        ?     ?     ?  
20  1  1  A  20  GLN  A  20  .  ?        ?     ?     ?  
21  1  1  A  21  ALA  A  21  .  ?        ?     ?     ?  
22  1  1  A  22  ILE  A  22  .  ?        ?     ?     ?  
23  1  1  A  23  ASP  A  23  .  ?        1     2     ?  
24  1  1  A  24  LEU  A  24  .  ?        ?     ?     ?  
25  1  1  A  25  ILE  A  25  .  ?        ?     ?     ?  
26  1  1  A  26  SER  A  26  .  ?        ?     ?     ?  
27  1  1  A  27  GLN  A  27  .  ?        ?     ?     ?  
28  1  1  A  28  THR  A  28  .  ?        ?     ?     ?  
29  1  1  A  29  TRP  A  29  .  ?        ?     1     ?  
30  1  1  A  30  PRO  A  30  .  ?        ?     ?     1  
31  1  1  A  31  VAL  A  31  .  ?        ?     ?     ?  
32  1  1  A  32  VAL  A  32  .  ?        ?     ?     ?  
33  1  1  A  33  THR  A  33  .  ?        ?     ?     1  
34  1  1  A  34  THR  A  34  .  ?        ?     ?     ?  
35  1  1  A  35  VAL  A  35  .  ?        ?     ?     ?  
36  1  1  A  36  VAL  A  36  .  ?        ?     ?     ?  
37  1  1  A  37  VAL  A  37  .  ?        ?     ?     ?  
38  1  1  A  38  ALA  A  38  .  ?        ?     ?     ?  
39  1  1  A  39  GLY  A  39  .  ?        ?     ?     ?  
40  1  1  A  40  LEU  A  40  .  ?        ?     ?     ?  
41  1  1  A  41  VAL  A  41  .  ?        ?     ?     ?  
42  1  1  A  42  ILE  A  42  .  ?        ?     ?     ?  
43  1  1  A  43  ARG  A  43  .  ?        ?     2     ?  
44  1  1  A  44  LEU  A  44  .  ?        ?     ?     ?  
45  1  1  A  45  PHE  A  45  .  ?        ?     ?     ?  
46  1  1  A  46  LYS  A  46  .  ?        ?     ?     ?  
47  1  1  A  47  LYS  A  47  .  ?        ?     ?     ?  
48  1  1  A  48  PHE  A  48  .  ?        ?     ?     ?  
49  1  1  A  49  SER  A  49  .  ?        ?     ?     1  
50  1  1  A  50  SER  A  50  .  ?        ?     ?     ?  
51  1  1  A  51  LYS  A  51  .  ?        ?     ?     ?  
52  1  1  A  52  ALA  A  52  .  ?        ?     ?     ?  
53  1  1  A  53  VAL  A  53  .  ?        ?     ?     1  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  ?            ?      ?  ?         7   5  0.34   7  2.02  molprobity  
 2   2  mt-10    -76.1  -68.4  Allowed   6   9  3.77  13  1.77  molprobity  
 3   3  Cg_endo  -61.4  -21.1  Favored   7   8  0.82  11  1.03  molprobity  
 4   4  m-80     -67.2  -53.9  Favored   6   8  0.38  11  1.06  molprobity  
 5   5  ?        -62.1  -38.9  Favored   5   5  0.50   7  1.47  molprobity  
 6   6  ?        -55.2  -45.0  Favored   5   5  0.47   7  1.49  molprobity  
 7   7  m        -68.7  -21.2  Favored   7   7  0.46  10  1.92  molprobity  
 8   8  m120     -63.8  -50.4  Favored   6   8  0.45  11  1.07  molprobity  
 9   9  m-85     -62.8  -44.7  Favored   9  13  0.51  18  1.18  molprobity  
10  10  ?        -55.9  -46.2  Favored   5   5  0.31   7  1.61  molprobity  
11  11  m        -57.8  -37.4  Favored   7   7  0.57  10  1.52  molprobity  
12  12  mt-10    -58.1  -53.9  Favored   6   9  3.71  12  1.43  molprobity  
13  13  ?        -64.3  -28.2  Favored   5   5  0.41   7  1.62  molprobity  
14  14  mtt      -65.5  -39.8  Favored   9   8  0.50  10  1.03  molprobity  
15  15  m-20     -76.2  -33.3  Favored   4   8  1.93  11  2.91  molprobity  
16  16  m        -62.3  -38.3  Favored   5   6  0.50   8  1.08  molprobity  
17  17  mt       -65.1  -31.4  Favored  11   8  0.46  11  1.03  molprobity  
18  18  tttt     -66.0  -50.7  Favored  13   9  0.50  11  1.04  molprobity  
19  19  m        -59.9  -47.2  Favored   7   7  0.50  10  1.13  molprobity  
20  20  mm100    -68.3  -31.6  Favored   8   9  0.39  12  1.54  molprobity  
21  21  ?        -62.9  -38.8  Favored   5   5  0.44   7  1.37  molprobity  
22  22  mt       -59.6  -39.5  Favored  11   8  0.61  11  1.27  molprobity  
23  23  m-20     -61.4  -45.7  Favored   4   8  1.94  11  2.88  molprobity  
24  24  mt       -59.9  -46.1  Favored  11   8  0.49  11  1.26  molprobity  
25  25  pt       -59.4  -31.8  Favored  11   8  0.53  11  1.47  molprobity  
26  26  m        -63.9  -28.1  Favored   5   6  0.46   8  1.18  molprobity  
27  27  mp0      -70.0  -32.2  Favored   8   9  0.47  12  1.25  molprobity  
28  28  OUTLIER  -61.1  -40.0  Favored   7   7  0.50  10  1.66  molprobity  
29  29  m-90     -59.8  -57.5  Favored  10  16  1.64  24  2.13  molprobity  
30  30  Cg_exo   -53.8  -25.9  Favored   7   8  0.79  11  1.25  molprobity  
31  31  t        -70.0  -50.0  Favored   9   7  0.63  10  1.82  molprobity  
32  32  t        -64.5  -29.5  Favored   9   7  0.67  10  2.29  molprobity  
33  33  p        -59.2  -43.4  Favored   7   7  0.39  10  1.84  molprobity  
34  34  p        -63.5  -35.3  Favored   7   7  0.40  10  1.46  molprobity  
35  35  t        -58.3  -42.8  Favored   9   7  0.73  10  1.89  molprobity  
36  36  t        -66.5  -24.7  Favored   9   7  0.68  10  2.03  molprobity  
37  37  t        -64.2  -44.9  Favored   9   7  0.66  10  1.83  molprobity  
38  38  ?        -59.9  -40.1  Favored   5   5  0.58   7  1.45  molprobity  
39  39  ?        -63.8  -48.8  Favored   3   4  0.75   5  1.12  molprobity  
40  40  mt       -72.0  -39.5  Favored  11   8  0.42  11  1.05  molprobity  
41  41  t        -71.0  -51.1  Favored   9   7  0.62  10  1.95  molprobity  
42  42  mt       -57.7  -45.8  Favored  11   8  0.55  11  1.54  molprobity  
43  43  mmt180   -67.4  -28.1  Favored  13  11  0.51  14  2.92  molprobity  
44  44  mt       -65.0  -37.4  Favored  11   8  0.43  11  1.25  molprobity  
45  45  m-85     -57.2  -43.4  Favored   9  12  0.64  16  0.96  molprobity  
46  46  mmtp     -57.1  -35.0  Favored  13   9  0.52  11  1.07  molprobity  
47  47  mmtt     -62.2  -36.0  Favored  13   9  0.54  11  1.49  molprobity  
48  48  m-85     -56.0  -53.7  Favored   9  12  0.68  16  1.18  molprobity  
49  49  m        -63.9  -49.9  Favored   5   6  0.39   8  1.27  molprobity  
50  50  m        -57.9  -41.7  Favored   5   6  0.52   8  1.08  molprobity  
51  51  mmtt     -65.0  -39.8  Favored  13   9  0.53  11  1.42  molprobity  
52  52  ?        -66.1  -18.9  Favored   5   5  0.54   7  1.46  molprobity  
53  53  t            ?      ?  ?         9   7  0.78   7  2.11  molprobity  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
1  30  HA    1  0.45  2.17  
2  33  OG1   1  0.45  2.17  
3  49  O     2  0.47  2.15  
4  53  HG23  2  0.47  2.15  
#
loop_
_pdbx_vrpt_instance_intra_bond_outliers.ordinal
_pdbx_vrpt_instance_intra_bond_outliers.instance_id
_pdbx_vrpt_instance_intra_bond_outliers.atom_1
_pdbx_vrpt_instance_intra_bond_outliers.atom_2
_pdbx_vrpt_instance_intra_bond_outliers.obs
_pdbx_vrpt_instance_intra_bond_outliers.mean
_pdbx_vrpt_instance_intra_bond_outliers.stdev
_pdbx_vrpt_instance_intra_bond_outliers.Z
1   2  CD  OE1  1.373  1.252  0.011  10.99  
2  12  CD  OE2  1.371  1.252  0.011  10.86  
3  15  CG  OD1  1.371  1.249  0.023   5.29  
4  23  CG  OD1  1.371  1.249  0.023   5.29  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
1  15  CB   CG   OD1  111.975  118.300  0.900  -7.03  
2  15  CB   CG   OD2  123.446  118.300  0.900   5.72  
3  23  CB   CG   OD1  112.039  118.300  0.900  -6.96  
4  23  CB   CG   OD2  123.392  118.300  0.900   5.66  
5  29  CD1  NE1  CE2  103.743  109.000  0.900  -5.84  
6  43  NE   CZ   NH1  124.174  120.300  0.500   7.75  
7  43  NE   CZ   NH2  117.579  120.300  0.500  -5.44  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
