data_3GM7

loop_
_pdbx_vrpt_database.id
_pdbx_vrpt_database.code
PDB  3GM7    
NDB  AR0104  
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    3GM7
_pdbx_vrpt_summary.PDB_deposition_date         2009-03-13
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2024-02-21
_pdbx_vrpt_summary.RNA_suiteness               0.51
_pdbx_vrpt_summary.report_creation_date        2024-06-13:06:04
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  "5'-R(*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*G)-3'"  
2  water    water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  1  
C  2  
D  2  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all   x-ray  
2  1.58  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore    
2  RSRZ_outliers_percent  
3  R_value_R_free         
4  RNAsuiteness_percent   
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   36.43  141614     ?     ?  
2  2  1   17.16    5861  1.56  1.60  
3  1  2  100.00  127900     ?     ?  
4  2  2  100.00    5431  1.56  1.60  
5  1  3   36.52  130704     ?     ?  
6  2  3    8.71    5534  1.56  1.60  
7  1  4   43.36    3102     ?     ?  
8  2  4   31.03    1015  0.86  2.36  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  G  100.00  
2  4  2  A  1  1  G  100.00  
3  3  2  B  1  1  H  100.00  
4  4  2  B  1  1  H  100.00  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  G  3.12  0.86  416  646  
2  1  1  B  H  2.53  0.88  416  646  
#
_pdbx_vrpt_summary_geometry.ordinal          1
_pdbx_vrpt_summary_geometry.clashscore       7.91
_pdbx_vrpt_summary_geometry.num_H_reduce     388
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ   832
_pdbx_vrpt_summary_geometry.bonds_RMSZ       0.87
_pdbx_vrpt_summary_geometry.num_angles_RMSZ  1292
_pdbx_vrpt_summary_geometry.angles_RMSZ      2.84
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 93.462
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            25.618
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         21.130
_pdbx_vrpt_summary_diffraction.I_over_sigma              2.54(1.58A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        11050
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.846
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.276
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.524
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.359
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.974
_pdbx_vrpt_summary_diffraction.twin_fraction             -h-k,k,-l:0.488
_pdbx_vrpt_summary_diffraction.DCC_R                     0.22
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.25
_pdbx_vrpt_summary_diffraction.EDS_R                     0.21
_pdbx_vrpt_summary_diffraction.EDS_res_high              1.58
_pdbx_vrpt_summary_diffraction.EDS_res_low               19.55
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[19.734,19.734,25.887,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.282
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The analyses of the Patterson function reveals a significant off-origin peak that is 68.08 % of the origin peak, indicating pseudo-translational symmetry.  The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 4.6371e-06. The detected translational NCS is most likely also responsible for the elevated intensity ratio.  See the relevant section of the logfile for more details."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         59
_pdbx_vrpt_summary_diffraction.centric_outliers          0
_pdbx_vrpt_summary_diffraction.data_completeness         99.99
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      1085
_pdbx_vrpt_summary_diffraction.percent_free_reflections  9.82
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     0.00
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       1.58
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        19.60
_pdbx_vrpt_summary_diffraction.PDB_R                     0.23
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.26
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
 1  1  1  A   1  C    G   1  .  ?        1     2  
 2  1  1  A   2  U    G   2  .  ?        4     ?  
 3  1  1  A   3  G    G   3  .  ?        2     2  
 4  1  1  A   4  C    G   4  .  ?        2     ?  
 5  1  1  A   5  U    G   5  .  ?        5     ?  
 6  1  1  A   6  G    G   6  .  ?        3     ?  
 7  1  1  A   7  C    G   7  .  ?        4     1  
 8  1  1  A   8  U    G   8  .  ?        2     ?  
 9  1  1  A   9  G    G   9  .  ?        5     1  
10  1  1  A  10  C    G  10  .  ?        1     1  
11  1  1  A  11  U    G  11  .  ?        6     ?  
12  1  1  A  12  G    G  12  .  ?        4     ?  
13  1  1  A  13  C    G  13  .  ?        2     1  
14  1  1  A  14  U    G  14  .  ?        ?     1  
15  1  1  A  15  G    G  15  .  ?        9     ?  
16  1  1  A  16  C    G  16  .  ?        1     ?  
17  1  1  A  17  U    G  17  .  ?        4     ?  
18  1  1  A  18  G    G  18  .  ?        ?     ?  
19  1  1  B   1  C    H   1  .  ?        ?     2  
20  1  1  B   2  U    H   2  .  ?        4     ?  
21  1  1  B   3  G    H   3  .  ?        ?     ?  
22  1  1  B   4  C    H   4  .  ?        4     ?  
23  1  1  B   5  U    H   5  .  ?        4     ?  
24  1  1  B   6  G    H   6  .  ?        5     ?  
25  1  1  B   7  C    H   7  .  ?        ?     ?  
26  1  1  B   8  U    H   8  .  ?        4     ?  
27  1  1  B   9  G    H   9  .  ?        1     ?  
28  1  1  B  10  C    H  10  .  ?        2     ?  
29  1  1  B  11  U    H  11  .  ?        1     1  
30  1  1  B  12  G    H  12  .  ?        1     1  
31  1  1  B  13  C    H  13  .  ?        2     ?  
32  1  1  B  14  U    H  14  .  ?        1     ?  
33  1  1  B  15  G    H  15  .  ?        ?     ?  
34  1  1  B  16  C    H  16  .  ?        5     2  
35  1  1  B  17  U    H  17  .  ?        4     ?  
36  1  1  B  18  G    H  18  .  ?        1     2  
37  1  2  C   .  HOH  G  19  .  ?        ?     ?  
38  1  2  C   .  HOH  G  20  .  ?        ?     ?  
39  1  2  C   .  HOH  G  21  .  ?        ?     ?  
40  1  2  C   .  HOH  G  22  .  ?        ?     ?  
41  1  2  C   .  HOH  G  23  .  ?        ?     ?  
42  1  2  C   .  HOH  G  24  .  ?        ?     ?  
43  1  2  C   .  HOH  G  25  .  ?        ?     ?  
44  1  2  C   .  HOH  G  26  .  ?        ?     ?  
45  1  2  C   .  HOH  G  27  .  ?        ?     ?  
46  1  2  C   .  HOH  G  28  .  ?        ?     ?  
47  1  2  C   .  HOH  G  29  .  ?        ?     ?  
48  1  2  C   .  HOH  G  30  .  ?        ?     ?  
49  1  2  C   .  HOH  G  31  .  ?        ?     ?  
50  1  2  C   .  HOH  G  32  .  ?        ?     ?  
51  1  2  C   .  HOH  G  33  .  ?        ?     ?  
52  1  2  C   .  HOH  G  34  .  ?        ?     ?  
53  1  2  C   .  HOH  G  35  .  ?        ?     ?  
54  1  2  C   .  HOH  G  36  .  ?        ?     ?  
55  1  2  C   .  HOH  G  37  .  ?        ?     ?  
56  1  2  C   .  HOH  G  38  .  ?        ?     ?  
57  1  2  C   .  HOH  G  39  .  ?        ?     ?  
58  1  2  C   .  HOH  G  40  .  ?        ?     ?  
59  1  2  C   .  HOH  G  49  .  ?        ?     1  
60  1  2  D   .  HOH  H  19  .  ?        ?     ?  
61  1  2  D   .  HOH  H  20  .  ?        ?     ?  
62  1  2  D   .  HOH  H  21  .  ?        ?     ?  
63  1  2  D   .  HOH  H  22  .  ?        ?     ?  
64  1  2  D   .  HOH  H  23  .  ?        ?     ?  
65  1  2  D   .  HOH  H  24  .  ?        ?     ?  
66  1  2  D   .  HOH  H  25  .  ?        ?     ?  
67  1  2  D   .  HOH  H  26  .  ?        ?     ?  
68  1  2  D   .  HOH  H  27  .  ?        ?     ?  
69  1  2  D   .  HOH  H  28  .  ?        ?     ?  
70  1  2  D   .  HOH  H  30  .  ?        ?     ?  
71  1  2  D   .  HOH  H  32  .  ?        ?     ?  
72  1  2  D   .  HOH  H  33  .  ?        ?     ?  
73  1  2  D   .  HOH  H  34  .  ?        ?     ?  
74  1  2  D   .  HOH  H  35  .  ?        ?     ?  
75  1  2  D   .  HOH  H  38  .  ?        ?     ?  
76  1  2  D   .  HOH  H  40  .  ?        ?     ?  
77  1  2  D   .  HOH  H  41  .  ?        ?     ?  
78  1  2  D   .  HOH  H  42  .  ?        ?     ?  
79  1  2  D   .  HOH  H  43  .  ?        ?     ?  
80  1  2  D   .  HOH  H  44  .  ?        ?     ?  
81  1  2  D   .  HOH  H  45  .  ?        ?     ?  
82  1  2  D   .  HOH  H  46  .  ?        ?     ?  
83  1  2  D   .  HOH  H  47  .  ?        ?     ?  
84  1  2  D   .  HOH  H  48  .  ?        ?     ?  
85  1  2  D   .  HOH  H  50  .  ?        ?     ?  
86  1  2  D   .  HOH  H  51  .  ?        ?     ?  
87  1  2  D   .  HOH  H  52  .  ?        ?     ?  
88  1  2  D   .  HOH  H  53  .  ?        ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.RNA_score
_pdbx_vrpt_model_instance_geometry.RNA_suite
_pdbx_vrpt_model_instance_geometry.RNA_pucker
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
 1   1  0.00  NotAvailable       ?          12  68.190    19  0.62    30  1.99  molprobity  1.000  
 2   2  0.59  Rotameric          ?          10  54.200    22  0.83    34  3.16  molprobity  1.000  
 3   3  0.71  Rotameric          ?          11  29.140    26  1.05    41  2.30  molprobity  1.000  
 4   4  0.78  Rotameric          ?          11  24.030    22  0.59    34  1.83  molprobity  1.000  
 5   5  0.45  Rotameric          ?          10  23.340    22  1.08    34  4.12  molprobity  1.000  
 6   6  0.61  Rotameric          ?          11  26.440    26  0.78    41  3.12  molprobity  1.000  
 7   7  0.59  Rotameric          ?          11  28.320    22  0.97    34  3.18  molprobity  1.000  
 8   8  0.00  Triaged/NotBinned  ?          10  47.250    22  0.92    34  2.71  molprobity  1.000  
 9   9  0.05  Rotameric          ?          11  41.460    26  0.63    41  3.21  molprobity  1.000  
10  10  0.42  Rotameric          ?          11  29.400    22  0.80    34  2.40  molprobity  1.000  
11  11  0.76  Rotameric          ?          10  26.890    22  1.01    34  4.03  molprobity  1.000  
12  12  0.73  Rotameric          ?          11  22.140    26  1.09    41  3.42  molprobity  1.000  
13  13  0.49  Rotameric          ?          11  23.120    22  0.97    34  4.28  molprobity  1.000  
14  14  0.52  Rotameric          ?          10  22.780    22  0.69    34  1.55  molprobity  1.000  
15  15  0.82  Rotameric          ?          11  25.850    26  1.02    41  4.17  molprobity  1.000  
16  16  0.63  Rotameric          ?          11  24.950    22  0.62    34  3.37  molprobity  1.000  
17  17  0.80  Rotameric          ?          10  29.010    22  0.81    34  3.56  molprobity  0.979  
18  18  0.15  Rotameric          ?          12  42.290    25  0.53    37  1.24  molprobity  1.000  
19  19  0.00  NotAvailable       ?          12  44.730    19  0.58    30  1.57  molprobity  1.000  
20  20  0.00  NonRotameric       ?          10  45.090    22  1.13    34  3.97  molprobity  0.970  
21  21  0.11  Rotameric          ?          11  38.360    26  0.56    41  1.16  molprobity  1.000  
22  22  0.53  Rotameric          ?          11  27.500    22  0.82    34  3.05  molprobity  1.000  
23  23  0.51  Rotameric          ?          10  31.300    22  1.80    34  3.33  molprobity  1.000  
24  24  0.00  NonRotameric       ?          11  20.380    26  1.14    41  3.07  molprobity  1.000  
25  25  0.65  Rotameric          ?          11  25.170    22  0.62    34  1.78  molprobity  1.000  
26  26  0.83  Rotameric          ?          10  35.730    22  0.66    34  3.03  molprobity  1.000  
27  27  0.56  Rotameric          ?          11  31.220    26  0.87    41  1.84  molprobity  1.000  
28  28  0.16  Rotameric          ?          11  33.460    22  0.59    34  2.16  molprobity  1.000  
29  29  0.39  Rotameric          ?          10  67.590    22  0.89    34  2.21  molprobity  1.000  
30  30  0.34  Rotameric          ?          11  40.090    26  0.58    41  2.53  molprobity  1.000  
31  31  0.90  Rotameric          ?          11  32.670    22  0.51    34  2.76  molprobity  1.000  
32  32  0.66  Rotameric          ?          10  38.670    22  0.96    34  2.45  molprobity  1.000  
33  33  0.68  Rotameric          ?          11  28.040    26  0.94    41  1.34  molprobity  1.000  
34  34  0.33  Rotameric          outlier    11  30.560    22  0.72    34  2.83  molprobity  1.000  
35  35  0.00  NonRotameric       ?          10  24.690    22  0.87    34  2.94  molprobity  1.000  
36  36  0.91  Rotameric          ?          12  29.920    25  0.62    37  2.07  molprobity  1.000  
37  37     ?  ?                  ?           ?  15.490     ?     ?     ?     ?  ?           0.330  
38  38     ?  ?                  ?           ?  54.380     ?     ?     ?     ?  ?           0.330  
39  39     ?  ?                  ?           ?  35.110     ?     ?     ?     ?  ?           0.330  
40  40     ?  ?                  ?           ?  34.210     ?     ?     ?     ?  ?           1.000  
41  41     ?  ?                  ?           ?  41.770     ?     ?     ?     ?  ?           1.000  
42  42     ?  ?                  ?           ?  38.010     ?     ?     ?     ?  ?           1.000  
43  43     ?  ?                  ?           ?  63.570     ?     ?     ?     ?  ?           1.000  
44  44     ?  ?                  ?           ?  35.850     ?     ?     ?     ?  ?           1.000  
45  45     ?  ?                  ?           ?  44.270     ?     ?     ?     ?  ?           1.000  
46  46     ?  ?                  ?           ?  50.360     ?     ?     ?     ?  ?           1.000  
47  47     ?  ?                  ?           ?  47.030     ?     ?     ?     ?  ?           1.000  
48  48     ?  ?                  ?           ?  42.300     ?     ?     ?     ?  ?           1.000  
49  49     ?  ?                  ?           ?  27.210     ?     ?     ?     ?  ?           1.000  
50  50     ?  ?                  ?           ?  26.400     ?     ?     ?     ?  ?           1.000  
51  51     ?  ?                  ?           ?  22.660     ?     ?     ?     ?  ?           1.000  
52  52     ?  ?                  ?           ?  49.560     ?     ?     ?     ?  ?           1.000  
53  53     ?  ?                  ?           ?  28.520     ?     ?     ?     ?  ?           1.000  
54  54     ?  ?                  ?           ?  51.860     ?     ?     ?     ?  ?           1.000  
55  55     ?  ?                  ?           ?  40.400     ?     ?     ?     ?  ?           1.000  
56  56     ?  ?                  ?           ?  35.850     ?     ?     ?     ?  ?           0.330  
57  57     ?  ?                  ?           ?  10.980     ?     ?     ?     ?  ?           0.330  
58  58     ?  ?                  ?           ?  29.110     ?     ?     ?     ?  ?           0.330  
59  59     ?  ?                  ?           ?  38.930     ?     ?     ?     ?  ?           1.000  
60  60     ?  ?                  ?           ?  20.200     ?     ?     ?     ?  ?           1.000  
61  61     ?  ?                  ?           ?  83.130     ?     ?     ?     ?  ?           0.330  
62  62     ?  ?                  ?           ?  57.160     ?     ?     ?     ?  ?           1.000  
63  63     ?  ?                  ?           ?  39.270     ?     ?     ?     ?  ?           1.000  
64  64     ?  ?                  ?           ?  21.610     ?     ?     ?     ?  ?           1.000  
65  65     ?  ?                  ?           ?  20.870     ?     ?     ?     ?  ?           1.000  
66  66     ?  ?                  ?           ?  21.160     ?     ?     ?     ?  ?           1.000  
67  67     ?  ?                  ?           ?  48.120     ?     ?     ?     ?  ?           1.000  
68  68     ?  ?                  ?           ?  37.060     ?     ?     ?     ?  ?           1.000  
69  69     ?  ?                  ?           ?  34.070     ?     ?     ?     ?  ?           0.330  
70  70     ?  ?                  ?           ?  36.930     ?     ?     ?     ?  ?           1.000  
71  71     ?  ?                  ?           ?  25.340     ?     ?     ?     ?  ?           1.000  
72  72     ?  ?                  ?           ?  42.940     ?     ?     ?     ?  ?           1.000  
73  73     ?  ?                  ?           ?  38.220     ?     ?     ?     ?  ?           1.000  
74  74     ?  ?                  ?           ?  51.220     ?     ?     ?     ?  ?           1.000  
75  75     ?  ?                  ?           ?  30.360     ?     ?     ?     ?  ?           1.000  
76  76     ?  ?                  ?           ?  48.600     ?     ?     ?     ?  ?           1.000  
77  77     ?  ?                  ?           ?  36.170     ?     ?     ?     ?  ?           1.000  
78  78     ?  ?                  ?           ?  29.310     ?     ?     ?     ?  ?           1.000  
79  79     ?  ?                  ?           ?  35.850     ?     ?     ?     ?  ?           1.000  
80  80     ?  ?                  ?           ?  37.220     ?     ?     ?     ?  ?           1.000  
81  81     ?  ?                  ?           ?  40.760     ?     ?     ?     ?  ?           1.000  
82  82     ?  ?                  ?           ?  36.370     ?     ?     ?     ?  ?           1.000  
83  83     ?  ?                  ?           ?  43.990     ?     ?     ?     ?  ?           1.000  
84  84     ?  ?                  ?           ?  41.450     ?     ?     ?     ?  ?           1.000  
85  85     ?  ?                  ?           ?  39.200     ?     ?     ?     ?  ?           1.000  
86  86     ?  ?                  ?           ?  66.460     ?     ?     ?     ?  ?           1.000  
87  87     ?  ?                  ?           ?  42.340     ?     ?     ?     ?  ?           1.000  
88  88     ?  ?                  ?           ?  46.230     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1   1  H42     1  0.81  1.28  
 2   1  N4      2  0.63  1.97  
 3   3  H1      3  0.69  1.41  
 4   3  H1      4  0.59  1.99  
 5   7  "H1'"   5  0.77  1.83  
 6   9  "H2'"   6  0.45  1.80  
 7  10  H6      6  0.45  1.80  
 8  13  "O2'"   7  0.41  2.19  
 9  14  "H5'"   7  0.41  2.19  
10  19  H6      8  0.42  1.84  
11  19  "H5''"  8  0.42  1.84  
12  29  "H2'"   9  0.46  2.51  
13  30  C8      9  0.46  2.51  
14  34  H42     3  0.69  1.41  
15  34  N4      4  0.59  1.99  
16  36  H1      1  0.81  1.28  
17  36  H1      2  0.63  1.97  
18  59  O       5  0.77  1.83  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
_pdbx_vrpt_instance_intra_angle_outliers.link
 1   1  OP1    P      "O3'"   91.627  105.200  2.200   -6.17  Y     
 2   2  "C4'"  "C3'"  "C2'"   97.099  102.600  1.000   -5.50  ?     
 3   2  C5     C4     O4     129.935  125.900  0.600    6.72  ?     
 4   2  N3     C4     O4     114.863  119.400  0.700   -6.48  ?     
 5   2  "O5'"  P      OP1    123.547  110.700  1.200   10.71  ?     
 6   3  P      "O3'"  "C3'"  127.001  119.700  1.200    6.08  Y     
 7   3  N1     C6     O6     123.765  119.900  0.600    6.44  ?     
 8   4  C5     C4     N4     124.107  120.200  0.700    5.58  ?     
 9   4  N3     C4     N4     114.328  118.000  0.700   -5.25  ?     
10   5  C2     N3     C4     131.289  127.000  0.600    7.15  ?     
11   5  "C4'"  "C3'"  "C2'"   97.579  102.600  1.000   -5.02  ?     
12   5  C5     C6     N1     127.090  122.700  0.500    8.78  ?     
13   5  N1     C2     O2     126.327  122.800  0.700    5.04  ?     
14   5  "O5'"  P      OP2     91.302  105.700  0.900  -16.00  ?     
15   6  C2     N3     C4     109.110  111.900  0.500   -5.58  ?     
16   6  N3     C4     C5     132.537  128.600  0.500    7.87  ?     
17   6  "O5'"  P      OP2     97.252  105.700  0.900   -9.39  ?     
18   7  OP1    P      "O3'"  125.338  105.200  2.200    9.15  Y     
19   7  P      "O3'"  "C3'"  110.904  119.700  1.200   -7.33  Y     
20   7  C6     N1     C2     118.227  120.300  0.400   -5.18  ?     
21   7  N3     C4     C5     118.340  121.900  0.400   -8.90  ?     
22   8  N3     C2     O2     126.439  122.200  0.700    6.06  ?     
23   8  "O5'"  P      OP1     96.742  105.700  0.900   -9.95  ?     
24   9  C2     N3     C4     109.355  111.900  0.500   -5.09  ?     
25   9  C6     N1     C2     129.095  125.100  0.600    6.66  ?     
26   9  N3     C4     C5     132.745  128.600  0.500    8.29  ?     
27   9  N3     C4     N9     122.227  126.000  0.600   -6.29  ?     
28   9  "O5'"  P      OP1     94.948  105.700  0.900  -11.95  ?     
29  10  N3     C2     O2     118.327  121.900  0.700   -5.11  ?     
30  11  OP2    P      "O3'"  117.343  105.200  2.200    5.52  Y     
31  11  C2     N3     C4     123.674  127.000  0.600   -5.54  ?     
32  11  C5     C4     O4     117.047  125.900  0.600  -14.76  ?     
33  11  N1     C2     O2     116.893  122.800  0.700   -8.44  ?     
34  11  N3     C2     O2     127.157  122.200  0.700    7.08  ?     
35  11  N3     C4     O4     125.805  119.400  0.700    9.15  ?     
36  12  OP2    P      "O3'"  124.197  105.200  2.200    8.63  Y     
37  12  C5     C6     O6     123.321  128.600  0.600   -8.80  ?     
38  12  N1     C6     O6     124.084  119.900  0.600    6.97  ?     
39  12  "O5'"  P      OP2     96.250  105.700  0.900  -10.50  ?     
40  13  C4     C5     C6     119.969  117.400  0.500    5.14  ?     
41  13  "O5'"  P      OP2     86.705  110.700  1.200  -20.00  ?     
42  15  P      "O3'"  "C3'"  113.371  119.700  1.200   -5.27  Y     
43  15  C4     C5     N7     113.909  110.800  0.400    7.77  ?     
44  15  C5     C6     N1     108.818  111.500  0.500   -5.36  ?     
45  15  C5     C6     O6     124.463  128.600  0.600   -6.89  ?     
46  15  C6     N1     C2     130.540  125.100  0.600    9.07  ?     
47  15  N1     C2     N3     120.809  123.900  0.600   -5.15  ?     
48  15  N1     C6     O6     126.709  119.900  0.600   11.35  ?     
49  15  N3     C4     C5     132.971  128.600  0.500    8.74  ?     
50  15  N9     C4     C5     102.866  105.400  0.400   -6.34  ?     
51  16  "O5'"  P      OP2     92.711  105.700  0.900  -14.43  ?     
52  17  C2     N3     C4     121.425  127.000  0.600   -9.29  ?     
53  17  C5     C4     O4     120.150  125.900  0.600   -9.58  ?     
54  17  N1     C2     N3     118.754  114.900  0.600    6.42  ?     
55  17  "O5'"  P      OP2     98.704  105.700  0.900   -7.77  ?     
56  20  "C4'"  "C3'"  "C2'"   97.104  102.600  1.000   -5.50  ?     
57  20  "O4'"  "C1'"  N1     112.446  108.200  0.800    5.31  ?     
58  20  "O5'"  P      OP2     88.929  110.700  1.200  -18.14  ?     
59  20  OP1    P      OP2    127.322  119.600  1.500    5.15  ?     
60  22  C2     N3     C4     122.526  119.900  0.500    5.25  ?     
61  22  "C4'"  "C3'"  "C2'"   96.985  102.600  1.000   -5.62  ?     
62  22  C5     C4     N4     125.581  120.200  0.700    7.69  ?     
63  22  N3     C4     C5     119.234  121.900  0.400   -6.67  ?     
64  23  "C5'"  "C4'"  "O4'"  115.787  109.100  1.200    5.57  ?     
65  23  C5     C4     O4     130.109  125.900  0.600    7.02  ?     
66  23  N1     "C1'"  "C2'"  106.207  112.000  1.100   -5.27  ?     
67  23  "O4'"  "C1'"  N1     115.535  108.200  0.800    9.17  ?     
68  24  C5     C6     O6     124.658  128.600  0.600   -6.57  ?     
69  24  C8     N9     C4     109.173  106.400  0.400    6.93  ?     
70  24  N1     C6     O6     123.807  119.900  0.600    6.51  ?     
71  24  N3     C2     N2     123.736  119.900  0.700    5.48  ?     
72  24  N9     C4     C5     103.099  105.400  0.400   -5.75  ?     
73  26  OP2    P      "O3'"  116.830  105.200  2.200    5.29  Y     
74  26  "C4'"  "C3'"  "C2'"   97.392  102.600  1.000   -5.21  ?     
75  26  C5     C4     O4     130.783  125.900  0.600    8.14  ?     
76  26  N3     C4     O4     112.798  119.400  0.700   -9.43  ?     
77  27  OP2    P      "O3'"   92.869  105.200  2.200   -5.61  Y     
78  28  C2     N3     C4     122.782  119.900  0.500    5.76  ?     
79  28  "O5'"  P      OP2    119.183  110.700  1.200    7.07  ?     
80  29  N3     C2     O2     118.648  122.200  0.700   -5.07  ?     
81  30  OP2    P      "O3'"   80.711  105.200  2.200  -11.13  Y     
82  31  OP2    P      "O3'"  122.356  105.200  2.200    7.80  Y     
83  31  "O5'"  P      OP2    123.165  110.700  1.200   10.39  ?     
84  32  "O5'"  P      OP2     97.725  105.700  0.900   -8.86  ?     
85  34  OP2    P      "O3'"   92.821  105.200  2.200   -5.63  Y     
86  34  P      "O3'"  "C3'"  126.093  119.700  1.200    5.33  Y     
87  34  N1     C2     O2     115.839  118.900  0.600   -5.10  ?     
88  34  N3     C2     O2     125.702  121.900  0.700    5.43  ?     
89  34  "O5'"  P      OP1    119.654  110.700  1.200    7.46  ?     
90  35  C2     N3     C4     123.792  127.000  0.600   -5.35  ?     
91  35  C5     C4     O4     120.285  125.900  0.600   -9.36  ?     
92  35  N1     C2     O2     118.944  122.800  0.700   -5.51  ?     
93  35  N3     C4     O4     123.653  119.400  0.700    6.08  ?     
94  36  "O5'"  P      OP2     99.766  105.700  0.900   -6.59  ?     
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
 1   1  17  0.841  0.137   1.130  
 2   2  20  0.853  0.126   0.483  
 3   3  23  0.915  0.129   1.224  
 4   4  20  0.974  0.111   0.504  
 5   5  20  0.958  0.111   0.207  
 6   6  23  0.953  0.110   0.617  
 7   7  20  0.947  0.110   0.480  
 8   8  20  0.915  0.117   0.317  
 9   9  23  0.895  0.123   1.032  
10  10  20  0.946  0.097   0.166  
11  11  20  0.976  0.072  -0.513  
12  12  23  0.930  0.118   0.872  
13  13  20  0.961  0.085  -0.123  
14  14  20  0.954  0.091  -0.162  
15  15  23  0.944  0.100   0.297  
16  16  20  0.928  0.127   0.889  
17  17  20  0.934  0.104   0.077  
18  18  23  0.899  0.116   0.808  
19  19  17  0.822  0.138   1.154  
20  20  20  0.912  0.117   0.317  
21  21  23  0.934  0.111   0.649  
22  22  20  0.968  0.094   0.094  
23  23  20  0.932  0.120   0.373  
24  24  23  0.927  0.110   0.617  
25  25  20  0.963  0.095   0.118  
26  26  20  0.916  0.138   0.705  
27  27  23  0.941  0.102   0.361  
28  28  20  0.936  0.093   0.070  
29  29  20  0.915  0.129   0.539  
30  30  23  0.910  0.122   1.000  
31  31  20  0.938  0.096   0.142  
32  32  20  0.930  0.141   0.760  
33  33  23  0.934  0.120   0.936  
34  34  20  0.959  0.116   0.624  
35  35  20  0.962  0.105   0.096  
36  36  23  0.927  0.118   0.872  
37  37   1  0.940  0.314       ?  
38  38   1  0.928  0.310       ?  
39  39   1  0.964  0.134       ?  
40  40   1  0.901  0.140       ?  
41  41   1  0.694  0.435       ?  
42  42   1  0.969  0.121       ?  
43  43   1  0.153  0.353       ?  
44  44   1  0.937  0.208       ?  
45  45   1  0.795  0.354       ?  
46  46   1  0.539  0.451       ?  
47  47   1  0.717  0.150       ?  
48  48   1  0.915  0.243       ?  
49  49   1  0.969  0.086       ?  
50  50   1  0.983  0.110       ?  
51  51   1  0.983  0.090       ?  
52  52   1  0.834  0.329       ?  
53  53   1  0.972  0.325       ?  
54  54   1  0.481  0.264       ?  
55  55   1  0.879  0.338       ?  
56  56   1  0.809  0.158       ?  
57  57   1  0.993  0.181       ?  
58  58   1  0.971  0.075       ?  
59  59   1  0.880  0.400       ?  
60  60   1  0.989  0.085       ?  
61  61   1  0.765  0.574       ?  
62  62   1  0.544  0.242       ?  
63  63   1  0.933  0.316       ?  
64  64   1  0.956  0.099       ?  
65  65   1  0.986  0.048       ?  
66  66   1  0.988  0.050       ?  
67  67   1  0.645  0.235       ?  
68  68   1  0.880  0.249       ?  
69  69   1  0.880  0.171       ?  
70  70   1  0.821  0.184       ?  
71  71   1  0.950  0.137       ?  
72  72   1  0.701  0.587       ?  
73  73   1  0.901  0.116       ?  
74  74   1  0.915  0.203       ?  
75  75   1  0.952  0.179       ?  
76  76   1  0.787  0.656       ?  
77  77   1  0.964  0.091       ?  
78  78   1  0.888  0.125       ?  
79  79   1  0.824  0.219       ?  
80  80   1  0.840  0.252       ?  
81  81   1  0.580  0.243       ?  
82  82   1  0.780  0.190       ?  
83  83   1  0.841  0.268       ?  
84  84   1  0.779  0.199       ?  
85  85   1  0.692  0.305       ?  
86  86   1  0.596  0.216       ?  
87  87   1  0.908  0.372       ?  
88  88   1  0.775  0.606       ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  eds          2.36.2                                                                Y  
3  dcc          '"2.27  (2023-04-10)"'                                                Y  
4  xtriage      1.20.1                                                                Y  
5  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
