data_1GIZ

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1GIZ
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    1GIZ
_pdbx_vrpt_summary.PDB_deposition_date         2000-10-31
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2022-02-23
_pdbx_vrpt_summary.report_creation_date        2022-08-20:12:07
_pdbx_vrpt_summary.attempted_validation_steps  mogul,molprobity,validation-pack,coreclust,chemicalshifts,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  "5'-D(*CP*CP*AP*AP*AP*GP*(D1P)P*AP*CP*TP*GP*GP*G)-3'"  
2  polymer  "5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'"  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  2.16  1.69  276  422  
2  1  2  B  B  1.95  1.70  291  447  
#
_pdbx_vrpt_summary_geometry.ordinal                 1
_pdbx_vrpt_summary_geometry.clashscore_full_length  0.00
_pdbx_vrpt_summary_geometry.num_H_reduce            292
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ          567
_pdbx_vrpt_summary_geometry.bonds_RMSZ              1.69
_pdbx_vrpt_summary_geometry.num_angles_RMSZ         869
_pdbx_vrpt_summary_geometry.angles_RMSZ             2.05
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_plane_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
 1  1  1  A   1  DC   A   1  .  ?        ?     1     ?     ?     ?  
 2  1  1  A   2  DC   A   2  .  ?        ?     ?     ?     ?     ?  
 3  1  1  A   3  DA   A   3  .  ?        ?     1     ?     ?     ?  
 4  1  1  A   4  DA   A   4  .  ?        1     2     ?     ?     ?  
 5  1  1  A   5  DA   A   5  .  ?        ?     2     ?     ?     ?  
 6  1  1  A   6  DG   A   6  .  ?        ?     1     ?     ?     ?  
 7  1  1  A   7  ORP  A   7  .  ?        ?     ?     ?     1     1  
 8  1  1  A   8  DA   A   8  .  ?        1     3     1     ?     ?  
 9  1  1  A   9  DC   A   9  .  ?        ?     ?     ?     ?     ?  
10  1  1  A  10  DT   A  10  .  ?        1     ?     ?     ?     ?  
11  1  1  A  11  DG   A  11  .  ?        ?     1     1     ?     ?  
12  1  1  A  12  DG   A  12  .  ?        ?     1     ?     ?     ?  
13  1  1  A  13  DG   A  13  .  ?        ?     1     ?     ?     ?  
14  1  2  B   1  DC   B  14  .  ?        ?     ?     ?     ?     ?  
15  1  2  B   2  DC   B  15  .  ?        ?     ?     ?     ?     ?  
16  1  2  B   3  DC   B  16  .  ?        ?     ?     ?     ?     ?  
17  1  2  B   4  DA   B  17  .  ?        ?     2     ?     ?     ?  
18  1  2  B   5  DG   B  18  .  ?        ?     1     ?     ?     ?  
19  1  2  B   6  DT   B  19  .  ?        1     1     ?     ?     ?  
20  1  2  B   7  DA   B  20  .  ?        ?     ?     ?     ?     ?  
21  1  2  B   8  DC   B  21  .  ?        ?     2     ?     ?     ?  
22  1  2  B   9  DT   B  22  .  ?        1     1     1     ?     ?  
23  1  2  B  10  DT   B  23  .  ?        ?     1     ?     ?     ?  
24  1  2  B  11  DT   B  24  .  ?        1     ?     ?     ?     ?  
25  1  2  B  12  DG   B  25  .  ?        1     1     1     ?     ?  
26  1  2  B  13  DG   B  26  .  ?        ?     1     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  12  18  1.66  28  2.16  molprobity  
 2   2  11  21  1.65  32  1.92  molprobity  
 3   3  11  24  1.52  37  2.14  molprobity  
 4   4  11  24  1.90  37  1.95  molprobity  
 5   5  11  24  1.60  37  2.50  molprobity  
 6   6  11  24  1.68  35  2.36  molprobity  
 7   7   8   9  0.67   8  1.23  mogul       
 8   8  11  24  1.99  37  2.70  molprobity  
 9   9  11  21  1.52  32  1.72  molprobity  
10  10  12  22  1.93  34  1.31  molprobity  
11  11  11  25  1.63  39  2.20  molprobity  
12  12  11  25  1.53  39  2.25  molprobity  
13  13  12  24  1.63  35  2.19  molprobity  
14  14  12  18  1.66  28  1.82  molprobity  
15  15  11  21  1.61  32  1.97  molprobity  
16  16  11  21  1.65  32  1.77  molprobity  
17  17  11  24  1.57  37  2.15  molprobity  
18  18  11  25  1.90  39  2.34  molprobity  
19  19  12  22  1.84  34  1.57  molprobity  
20  20  11  24  1.38  37  1.36  molprobity  
21  21  11  21  1.52  32  2.27  molprobity  
22  22  12  22  1.89  34  1.64  molprobity  
23  23  12  22  1.60  34  1.82  molprobity  
24  24  12  22  1.83  34  1.42  molprobity  
25  25  11  25  1.96  39  2.32  molprobity  
26  26  12  24  1.49  35  2.35  molprobity  
#
loop_
_pdbx_vrpt_instance_intra_plane_outliers.ordinal
_pdbx_vrpt_instance_intra_plane_outliers.instance_id
_pdbx_vrpt_instance_intra_plane_outliers.type
_pdbx_vrpt_instance_intra_plane_outliers.plane_rmsd
1   8  sidechain  0.07  
2  11  sidechain  0.09  
3  22  sidechain  0.08  
4  25  sidechain  0.07  
#
loop_
_pdbx_vrpt_instance_intra_bond_outliers.ordinal
_pdbx_vrpt_instance_intra_bond_outliers.instance_id
_pdbx_vrpt_instance_intra_bond_outliers.atom_1
_pdbx_vrpt_instance_intra_bond_outliers.atom_2
_pdbx_vrpt_instance_intra_bond_outliers.obs
_pdbx_vrpt_instance_intra_bond_outliers.mean
_pdbx_vrpt_instance_intra_bond_outliers.stdev
_pdbx_vrpt_instance_intra_bond_outliers.Z
1   4  N9  C4  1.411  1.374  0.006   6.16  
2   8  N9  C4  1.412  1.374  0.006   6.39  
3  10  N1  C2  1.418  1.376  0.008   5.27  
4  19  N1  C2  1.420  1.376  0.008   5.46  
5  22  N1  C2  1.423  1.376  0.008   5.86  
6  24  N1  C2  1.416  1.376  0.008   5.02  
7  25  N9  C8  1.332  1.374  0.007  -6.05  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
_pdbx_vrpt_instance_intra_angle_outliers.link
 1   1  N1     C2     O2     122.238  118.900  0.600   5.56  ?     
 2   3  N1     C6     N6     122.624  118.600  0.600   6.71  ?     
 3   4  P      "O3'"  "C3'"  125.805  119.700  1.200   5.09  Y     
 4   4  N1     C6     N6     121.830  118.600  0.600   5.38  ?     
 5   5  C5     C6     N6     118.459  123.700  0.800  -6.55  ?     
 6   5  N1     C6     N6     124.402  118.600  0.600   9.67  ?     
 7   6  N3     C2     N2     125.057  119.900  0.700   7.37  ?     
 8   8  C5     C6     N6     118.810  123.700  0.800  -6.11  ?     
 9   8  N1     C6     N6     123.614  118.600  0.600   8.36  ?     
10   8  "O4'"  "C1'"  "C2'"  101.744  105.900  0.800  -5.20  ?     
11  11  C2     N3     C4     114.447  111.900  0.500   5.09  ?     
12  12  N3     C2     N2     125.244  119.900  0.700   7.63  ?     
13  13  N3     C2     N2     124.547  119.900  0.700   6.64  ?     
14  17  P      "O3'"  "C3'"  126.731  119.700  1.200   5.86  Y     
15  17  N1     C6     N6     122.539  118.600  0.600   6.57  ?     
16  18  N3     C2     N2     123.550  119.900  0.700   5.21  ?     
17  19  P      "O3'"  "C3'"  126.328  119.700  1.200   5.52  Y     
18  21  P      "O3'"  "C3'"  127.748  119.700  1.200   6.71  Y     
19  21  N1     C2     O2     121.949  118.900  0.600   5.08  ?     
20  22  P      "O3'"  "C3'"  127.352  119.700  1.200   6.38  Y     
21  23  P      "O3'"  "C3'"  126.863  119.700  1.200   5.97  Y     
22  25  N3     C2     N2     124.400  119.900  0.700   6.43  ?     
23  26  N3     C2     N2     124.764  119.900  0.700   6.95  ?     
#
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal      1
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id  7
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1       O5
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2       C5
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3       C4
_pdbx_vrpt_instance_mogul_angle_outliers.obsval       118.11
_pdbx_vrpt_instance_mogul_angle_outliers.mean         108.99
_pdbx_vrpt_instance_mogul_angle_outliers.numobs       486
_pdbx_vrpt_instance_mogul_angle_outliers.stdev        3.40
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore       2.68
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff      0.05
#
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal        1
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id    7
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1         C4
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2         C5
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3         O5
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4         P
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval         14.42
_pdbx_vrpt_instance_mogul_torsion_outliers.mean           141.83
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs         456
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev          19.04
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff        69.17
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density  0.00
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
