# ----------------------------------------------------------------------------
# Copyright (c) 2013--, scikit-bio development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE.txt, distributed with this software.
# ----------------------------------------------------------------------------

# ruff: noqa: D104

# Add skbio.io to sys.modules to prevent cycles in our imports
import skbio.io  # noqa

# imports included for convenience
from skbio.sequence import Sequence, DNA, RNA, Protein, GeneticCode, SubstitutionMatrix
from skbio.stats.distance import DistanceMatrix
from skbio.alignment import TabularMSA
from skbio.tree import TreeNode, nj
from skbio.embedding import ProteinEmbedding
from skbio.io import read, write
from skbio.stats.ordination import OrdinationResults
from skbio.table import Table
from skbio.metadata import SampleMetadata
import skbio.diversity  # noqa
import skbio.binaries  # noqa
import skbio.stats.evolve  # noqa
from ._config import get_config, set_config


__all__ = [
    "Sequence",
    "DNA",
    "RNA",
    "Protein",
    "GeneticCode",
    "SubstitutionMatrix",
    "DistanceMatrix",
    "TabularMSA",
    "TreeNode",
    "nj",
    "read",
    "write",
    "OrdinationResults",
    "Table",
    "SampleMetadata",
    "get_config",
    "set_config",
]

__credits__ = "https://github.com/scikit-bio/scikit-bio/graphs/contributors"
__version__ = "0.7.3"


mottos = [
    # 03/15/2014
    "It's gonna get weird, bro.",
    # 05/14/2014
    "no cog yay",
    # 03/18/2015
    "bincount!",
]
motto = mottos[-1]

# Created at patorjk.com

title = r"""
*                                                    *
               _ _    _ _          _     _
              (_) |  (_) |        | |   (_)
      ___  ___ _| | ___| |_ ______| |__  _  ___
     / __|/ __| | |/ / | __|______| '_ \| |/ _ \
     \__ \ (__| |   <| | |_       | |_) | | (_) |
     |___/\___|_|_|\_\_|\__|      |_.__/|_|\___/

*                                                    *
"""

# Created by @gregcaporaso

art = r"""

           Opisthokonta
                   \  Amoebozoa
                    \ /
                     *    Euryarchaeota
                      \     |_ Crenarchaeota
                       \   *
                        \ /
                         *
                        /
                       /
                      /
                     *
                    / \
                   /   \
        Proteobacteria  \
                       Cyanobacteria
"""

__doc__ = title + art + (__doc__ or "")
